Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1069
         (468 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   235   6e-62
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       235   6e-62
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   235   6e-62
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   235   6e-62
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   235   6e-62
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       235   6e-62
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   235   6e-62
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   235   6e-62
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   235   6e-62
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...   152   5e-37

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (575), Expect = 6e-62
 Identities = 106/128 (82%), Positives = 120/128 (93%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIR 220
           K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIR
Sbjct: 30  KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIR 89

Query: 221 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGK 400
           RDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV+K  
Sbjct: 90  RDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149

Query: 401 GSQEVFEK 424
           G+++ F+K
Sbjct: 150 GTKKQFQK 157


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score =  152 bits (369), Expect = 5e-37
 Identities = 68/82 (82%), Positives = 77/82 (93%)
 Frame = +2

Query: 179 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 358
           VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60

Query: 359 KTVRFNVLKVSKGKGSQEVFEK 424
           KTVRFNVLKV+K  G+++ F+K
Sbjct: 61  KTVRFNVLKVTKAAGTKKQFQK 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,077,566
Number of Sequences: 237096
Number of extensions: 1242858
Number of successful extensions: 2127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)