Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1069
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   192   8e-50
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    27   6.7  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    27   6.7  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    27   6.7  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  192 bits (469), Expect = 8e-50
 Identities = 87/127 (68%), Positives = 103/127 (81%)
 Frame = +2

Query: 44  RKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 223
           +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ GNV IRG ILTGVV K KM RTIV+RR
Sbjct: 28  KKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRR 87

Query: 224 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGKG 403
           DYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTVRFNVLKV+K   
Sbjct: 88  DYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKVNKSGT 147

Query: 404 SQEVFEK 424
           S++ F K
Sbjct: 148 SKKGFSK 154


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 184 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 303
           S+NED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 382 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 278
           +++E  CF Q   F D +N+T L + +  R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 195 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 290
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 195 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 290
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 195 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 290
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 436 VYXNFFKDFLRALAL*NFQNIESNCFGQRSAFADRYNITNLHVPEAR 296
           ++  FF DFLR LAL  F  I       +  F D Y   +L +P+ R
Sbjct: 157 IFLIFFVDFLRVLAL--FSAILKQTPPSKINFQDAYLSAHLLLPDGR 201


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 280 VRAFVALLQGRGDW*YCNDRRMQ 348
           +RAFV L++   DW Y   RRMQ
Sbjct: 250 LRAFVRLIRNNSDW-YARYRRMQ 271


>AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical
           protein F08F1.3 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 412 FLRALAL*NFQNIESN---CFGQRSAFADRYNITNLHVP 305
           FL    L  F NI ++   CF   S  AD+Y I+ +H+P
Sbjct: 166 FLHLKILVYFDNIRNHFPLCFVFDSKIADKYAISKVHLP 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,177,262
Number of Sequences: 27780
Number of extensions: 201057
Number of successful extensions: 531
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)