Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1067
         (300 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   0.93 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   1.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   2.2  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   3.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   8.7  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    19   8.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 0.93
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 130 GSFH*IQV*CRSTYGTCWPECC*CHCQGL 216
           G +  +   C +   TCW EC    C+ L
Sbjct: 869 GEYKCVTCKCENGKPTCWRECDKATCEKL 897


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 220 WEDLGNGTSNTQASKFHKLID 158
           WE L   T  ++ SK  +L+D
Sbjct: 105 WESLIEVTKTSETSKLQQLVD 125


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 96  YRVTVLH*F--IPLVIVPMLYSFATRNI 19
           Y +T++  F  IPL+I+ +LY    +N+
Sbjct: 237 YFLTIIFLFFIIPLIILLILYCIIAKNL 264


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 143 EYKFSVDQLMELAGLSVASAIAKVFPPST 229
           EY  S++ L+ L   +V+S+ + +  PST
Sbjct: 109 EYIRSLEDLLALDESTVSSSTSSIPSPST 137


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 187 ECC*CHCQGLPTLNSLISSYSVRARK 264
           EC    CQ   T   LI SYS +  K
Sbjct: 187 ECDSAPCQNGGTCLDLIGSYSCKCPK 212


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 221 PSTHLSALIVC 253
           PS+H+SA++ C
Sbjct: 540 PSSHVSAVLTC 550



 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 112  SGSTGPGS 135
            SGS+GPGS
Sbjct: 1115 SGSSGPGS 1122


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 112 SGSTGPGSFH 141
           SG+TGP ++H
Sbjct: 925 SGATGPFAYH 934


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 7   RECSNIACSKTV 42
           R   ++ACSKTV
Sbjct: 482 RAIDSVACSKTV 493


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,476
Number of Sequences: 336
Number of extensions: 1332
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)