Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1067
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    84   4e-18
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   0.59 
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   0.78 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   3.1  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    24   5.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    24   5.5  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    23   7.3  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    23   9.6  

>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 84.2 bits (199), Expect = 4e-18
 Identities = 39/66 (59%), Positives = 49/66 (74%)
 Frame = +2

Query: 98  LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNGGD 277
           L+ S A ALD +L +   FS+DQLMELAGLSV+ A+ + +PPS +   LI CGPGNNGGD
Sbjct: 6   LSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65

Query: 278 GLVARK 295
           GLVA +
Sbjct: 66  GLVAAR 71


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 13  CSNIACSKTV*HRNYDERYESMQYCDAVPQ 102
           C+ I+C     +  Y  +Y S  YCDA  Q
Sbjct: 395 CNEISCDGITANGTYPGQYGSYSYCDAKQQ 424


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +2

Query: 8   GSALILRVAKLYNIGTMTSG-MNQCNTVTRYLNQSEAA-ALDQDL--FTEYKFSVDQLME 175
           G  ++L+++K+     M  G +N  +   R    +E +  +D ++    E    V++ M 
Sbjct: 638 GMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDNETSDPMDVEIKQLLETNSLVEEFML 697

Query: 176 LAGLSVASAIAKVFPPSTHL 235
           LA +SVA  I   FP +  L
Sbjct: 698 LANISVAQKIYDAFPQTAVL 717


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 86  VTRYLNQSEAAALDQDLFTEYKFSVDQLME 175
           +++ LNQ     L+ DL T YKF    ++E
Sbjct: 55  LSKVLNQPNFRFLEMDLATNYKFLYQFMVE 84


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 279 PSPPLFPGPHTIRADK*VEGGKTLAM 202
           P PP +PGP+T  A K VE  + LAM
Sbjct: 127 PPPPSYPGPNT--AHKNVE--RVLAM 148


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 236 ISELRVGRPWQW 201
           I+E+ VG+ WQW
Sbjct: 322 IAEMNVGKRWQW 333


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 AGLSVASAIAKVFPPSTHLSALIVCGPG 262
           +G ++ SAIA +  PS+   A+ V  PG
Sbjct: 44  SGTALYSAIASLGDPSSPWDAVYVASPG 71


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   VVRECSNIACSKTV*HRNYDERYES 75
           + RE  NI C     +  Y+ RYE+
Sbjct: 646 IARELYNIICRAEERYSQYENRYEN 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,039
Number of Sequences: 5004
Number of extensions: 20745
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)