Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1067
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 87 3e-18
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 28 1.6
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395... 28 1.6
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 27 2.1
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 27 2.1
03_03_0062 + 14170303-14170637,14171799-14172029,14172224-141723... 27 3.6
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 27 3.6
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 27 3.6
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 26 4.7
02_04_0413 + 22681957-22682035,22682253-22682788 26 6.3
12_02_1231 + 27208872-27208876,27209276-27209741 25 8.3
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 25 8.3
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 86.6 bits (205), Expect = 3e-18
Identities = 40/67 (59%), Positives = 50/67 (74%)
Frame = +2
Query: 95 YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNGG 274
+L Q EAA +D+ L FSVDQLMELAGLSVA+A+A+V+ H L++CGPGNNGG
Sbjct: 19 HLAQREAAEIDEQLMGPLGFSVDQLMELAGLSVAAAVAEVYKLGEHTRVLVICGPGNNGG 78
Query: 275 DGLVARK 295
DGLVA +
Sbjct: 79 DGLVAAR 85
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 98 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPS-THLSALIVCGPGNNGG 274
L +E D + + ++++ Q + A+A+A FP S T L +C P ++GG
Sbjct: 322 LRDAERIVYDDNGCSYKQYTISQYFTTSA-GEAAAMATAFPYSFTRTKHLTLCPPSSHGG 380
Query: 275 D 277
D
Sbjct: 381 D 381
>03_01_0526 +
3956909-3957071,3957262-3957317,3957398-3957462,
3957560-3958006,3958102-3958227,3958328-3958511,
3958788-3958943
Length = 398
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 294 LRATKPSPPLFPGPHTIRADK*VEGGKTLA 205
++AT P+P FP P T R GG ++A
Sbjct: 309 VKATPPTPQRFPSPSTNRVKNVKAGGMSMA 338
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 149 KFSVDQLMELAGLSVA---SAIAKVFPPSTHLSALIVCGPGNNGGDGLVA 289
K +D++ LAG + S+I+ PPS + + G G+NGG GL A
Sbjct: 239 KDELDRVCALAGKFLGRPISSISSPGPPSLQACSGLELGVGSNGGFGLGA 288
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 223 GWE-DLGNGTSNTQASKFHKLIDTKLVFSE 137
GWE D G+ NT AS+F + ID FSE
Sbjct: 344 GWEVDQGSYFPNTFASRFDEGIDASFDFSE 373
>03_03_0062 +
14170303-14170637,14171799-14172029,14172224-14172326,
14173284-14173513,14174258-14174456
Length = 365
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 207 AMALATLRPASSIS*STLNLYSVKRSWSSAAASD*LRY 94
A ALA L SS S S+ S++ SW SAAA +Y
Sbjct: 36 AAALAVLCLLSSSSSSSSRTSSLRGSWGSAAAKGGKKY 73
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +2
Query: 77 CNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCG 256
C+++ R + +S ++ D T YK + + + +S V PP L CG
Sbjct: 421 CDSLFRLIERSISSVYDIIFQTHYKMPRNPVYMMDTSPSSSQSFSVDPPKEFFQMLSACG 480
Query: 257 P 259
P
Sbjct: 481 P 481
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 202 HCQGLPTLNSLISSYSVRARK*WRRWFSS 288
HC + ++ L+SS+SV R+W++S
Sbjct: 1665 HCLAVDDMHDLLSSWSVNLLATVRKWYTS 1693
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 188 SVASAIAKVFPPSTHLSALIVCGPG 262
++ AIAK PPS + + V GPG
Sbjct: 83 AIGQAIAKNLPPSDIIESTSVAGPG 107
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +1
Query: 157 CRSTYGTCWPECC*CHCQG 213
C + + C P CC C C G
Sbjct: 135 CENHHPPCKPGCCCCGCSG 153
>12_02_1231 + 27208872-27208876,27209276-27209741
Length = 156
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 170 MELAGLSVASAIAKVFPPST-HLSALIVCGPGNNGGDGLVARKT 298
M +AG S V P L+A + C +NGG G VAR++
Sbjct: 67 MLMAGSKSFSKARAVRPEDDPFLAAYLACTKSSNGGGGGVARES 110
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 228 VEGGKTLAMALATLRPASSIS*STL-NLYSVKRSWSSAAA 112
++ G+ +A + RP+ + L N+Y+ K WSSAA+
Sbjct: 560 IQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAAS 599
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,444,549
Number of Sequences: 37544
Number of extensions: 159662
Number of successful extensions: 443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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