Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1067
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.70 
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              29   0.70 
SB_45598| Best HMM Match : Peptidase_C5 (HMM E-Value=0.3)              27   2.1  
SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0)                      27   2.8  
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)                   27   2.8  
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)       27   3.7  
SB_29657| Best HMM Match : DUF1453 (HMM E-Value=8.3)                   27   3.7  
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               25   8.6  

>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 100 QSVRSGSTGPGSFH*IQV*CRSTYGTCWPECC*CHCQGLP 219
           QS+ +GS  P S     V C S   +C   C  CHC+  P
Sbjct: 640 QSIDAGSEVPKSAKKQSVSCVSVASSCLEICRICHCEAEP 679


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 92  RYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIV 250
           RY ++ +   L      E +   D LME+A  +VAS+  K  P S  L  L+V
Sbjct: 318 RYKSEPDHGLLSSKSTPEKRSKSDPLMEVAQSAVASSSKKARPLSASLENLLV 370


>SB_45598| Best HMM Match : Peptidase_C5 (HMM E-Value=0.3)
          Length = 604

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 17  LILRVAKLYNIGTMTSGMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSV 193
           L LR  ++ N G +T+ + +      +  QSE  A DQD + +    VD + E    +V
Sbjct: 23  LTLRPTRVSNWGQLTAHLKEVVDHFAFTRQSERLAFDQD-YLDLHVDVDTINEKVTFTV 80


>SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 595

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 202 HCQGLPTLNSLISSYSVRARK*WRR 276
           HC G+ TLN++I  Y V   K W+R
Sbjct: 321 HCPGMETLNNMI--YIVGGSKEWKR 343


>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
          Length = 1033

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 17  LILRVAKLYNIGTMTSGMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSV 193
           L LR  K+ +   +T+ + +      Y  QSE  ALDQD + +    VD++ E    +V
Sbjct: 621 LTLRPTKVSDWKGLTTNLKEVVDHFSYTRQSERLALDQD-WLDLHVDVDEVNEKVTFTV 678


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/52 (32%), Positives = 19/52 (36%)
 Frame = +1

Query: 19  NIACSKTV*HRNYDERYESMQYCDAVPQSVRSGSTGPGSFH*IQV*CRSTYG 174
           N+ CSK       +   ES Q C      VR     PG    IQ  CR   G
Sbjct: 191 NVICSKCDGRGGKEGCVESCQTCHGSGMYVRINRIAPGMVQQIQTVCRDCGG 242


>SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)
          Length = 811

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 155 SVDQLMELAGLSVASAIAKVF 217
           SVDQ+M +AG S AS  AK +
Sbjct: 695 SVDQIMSVAGWSSASTFAKFY 715


>SB_29657| Best HMM Match : DUF1453 (HMM E-Value=8.3)
          Length = 133

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 84 VLH*FIPLVIVPMLYSFATRNI 19
          +LH  +PLV VP++Y+   R I
Sbjct: 9  ILHHLLPLVTVPLIYALIYRRI 30


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -1

Query: 228 VEGGKTLAMALATLRPASSIS*STLNLYSVKRSWSSAAASD*LRYR----VTVLH*FIPL 61
           +E GK  A  L    P +S S +T+N Y  +R W     S+ L Y+    V  +    PL
Sbjct: 30  LEYGK--AANLNVFYPVNSTSVATVNRYQGRRFW---LVSNVLLYKDGDPVLKVERGTPL 84

Query: 60  VIVPMLYSFATRN 22
            ++ MLY+   +N
Sbjct: 85  TVIKMLYNADPKN 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,411,004
Number of Sequences: 59808
Number of extensions: 170532
Number of successful extensions: 369
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)