Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1067
         (300 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   0.47 
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    21   7.6  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    21   7.6  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 119 ALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTH 232
           ALD   FTE   S + L  +   +  +A+A+VFP   H
Sbjct: 249 ALDVASFTERVTSAESLERVMTEACDAAMARVFPSQGH 286


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 202 GTSNTQASKFHKLIDTKLVFSEKILVQCCRF*LIEVPR 89
           G S +Q + F++    KL+  + I ++   + L+E+P+
Sbjct: 601 GDSKSQRNIFNRYPMLKLMIKDVIRLETQYWTLVEIPK 638


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 202 GTSNTQASKFHKLIDTKLVFSEKILVQCCRF*LIEVPR 89
           G S +Q + F++    KL+  + I ++   + L+E+P+
Sbjct: 601 GDSKSQRNIFNRYPMLKLMIKDVIRLETQYWTLVEIPK 638


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,007
Number of Sequences: 2352
Number of extensions: 5366
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 19123236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)