Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1067
         (300 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094914-1|AAM11267.1|  275|Drosophila melanogaster RH19667p pro...   104   2e-23
AE014298-1410|AAF46554.1|  275|Drosophila melanogaster CG2974-PA...   104   2e-23
AY070614-1|AAL48085.1|  605|Drosophila melanogaster RE71584p pro...    28   2.5  
AE014297-1557|AAF54839.1|  635|Drosophila melanogaster CG18616-P...    28   2.5  
AY119517-1|AAM50171.1|  244|Drosophila melanogaster GH14476p pro...    26   7.7  
AE013599-3915|AAF47238.1|  244|Drosophila melanogaster CG3565-PA...    26   7.7  

>AY094914-1|AAM11267.1|  275|Drosophila melanogaster RH19667p
           protein.
          Length = 275

 Score =  104 bits (249), Expect = 2e-23
 Identities = 47/68 (69%), Positives = 54/68 (79%)
 Frame = +2

Query: 92  RYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNG 271
           +YLNQ EA A+DQ+LF +YKFSVDQLMELAGLS A A+AK FP   H   L+ CGPGNNG
Sbjct: 49  KYLNQKEAIAVDQELFNDYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNG 108

Query: 272 GDGLVARK 295
           GDGLVA +
Sbjct: 109 GDGLVAAR 116


>AE014298-1410|AAF46554.1|  275|Drosophila melanogaster CG2974-PA
           protein.
          Length = 275

 Score =  104 bits (249), Expect = 2e-23
 Identities = 47/68 (69%), Positives = 54/68 (79%)
 Frame = +2

Query: 92  RYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNG 271
           +YLNQ EA A+DQ+LF +YKFSVDQLMELAGLS A A+AK FP   H   L+ CGPGNNG
Sbjct: 49  KYLNQKEAIAVDQELFNDYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNG 108

Query: 272 GDGLVARK 295
           GDGLVA +
Sbjct: 109 GDGLVAAR 116


>AY070614-1|AAL48085.1|  605|Drosophila melanogaster RE71584p
           protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 89  TRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNN 268
           T  LN++EA  LD   + +YK ++      +  +  +A+    PPS   ++ +V  PG  
Sbjct: 157 TNQLNRAEAF-LD---YLQYKLNLVATAPSSNAAEEAAVVGTAPPSAATNSSVVASPGGA 212

Query: 269 GGDGLV 286
             +G V
Sbjct: 213 AVEGAV 218


>AE014297-1557|AAF54839.1|  635|Drosophila melanogaster CG18616-PA
           protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 89  TRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNN 268
           T  LN++EA  LD   + +YK ++      +  +  +A+    PPS   ++ +V  PG  
Sbjct: 157 TNQLNRAEAF-LD---YLQYKLNLVATAPSSNAAEEAAVVGTAPPSAATNSSVVASPGGA 212

Query: 269 GGDGLV 286
             +G V
Sbjct: 213 AVEGAV 218


>AY119517-1|AAM50171.1|  244|Drosophila melanogaster GH14476p
           protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 47  IGTMTSGMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLS--VASAIAKVFP 220
           +G      ++  ++   L+  E   L  DL  +    VD+  E+      +     +VFP
Sbjct: 149 VGKFFESEDEDESIELRLDMKEMLFLKFDLDKDTNIGVDEYYEVVRRQPMLLECFGRVFP 208

Query: 221 PSTHLSALIVC 253
           P+  +  L +C
Sbjct: 209 PNPQMEVLALC 219


>AE013599-3915|AAF47238.1|  244|Drosophila melanogaster CG3565-PA
           protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 47  IGTMTSGMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLS--VASAIAKVFP 220
           +G      ++  ++   L+  E   L  DL  +    VD+  E+      +     +VFP
Sbjct: 149 VGKFFESEDEDESIELRLDMKEMLFLKFDLDKDTNIGVDEYYEVVRRQPMLLECFGRVFP 208

Query: 221 PSTHLSALIVC 253
           P+  +  L +C
Sbjct: 209 PNPQMEVLALC 219


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,248
Number of Sequences: 53049
Number of extensions: 261146
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 549010566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)