Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1067
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   5.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   5.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   5.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   7.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   7.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 288 ATKPSPPLFPGPHTIRADK 232
           A  P PP   GP + + DK
Sbjct: 342 APPPPPPSSSGPDSAKLDK 360


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 279 PSPPLFPGPHTIRADK*VE 223
           P PP  PG H   A K  E
Sbjct: 332 PGPPGVPGDHGDHAPKQTE 350


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 279 PSPPLFPGPHTIRADK*VE 223
           P PP  PG H   A K  E
Sbjct: 332 PGPPGVPGDHGDHAPKQTE 350


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 176 LAGLSVASAIAKVFPPSTHLSALIVCGPGN 265
           +AG+ V SA A  +PP   L+A+++   G+
Sbjct: 317 IAGIVVISAGADAYPP---LAAIVLGAIGS 343


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 29 VAKLYNIGTMTSGMNQCNTV 88
          V  +Y+      GMNQC  V
Sbjct: 20 VVHVYHPYRQPDGMNQCQAV 39


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 29 VAKLYNIGTMTSGMNQCNTV 88
          V  +Y+      GMNQC  V
Sbjct: 20 VVHVYHPYRQPDGMNQCQAV 39


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 297  VLRATKPSPPLFPGPHTIR 241
            VLRA+ P+P +    H  R
Sbjct: 1107 VLRASTPAPVVLEAVHASR 1125


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 279 PSPPLFPGPHTIRADK 232
           P PP  PG H   A K
Sbjct: 271 PGPPGVPGDHGDHAPK 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,073
Number of Sequences: 438
Number of extensions: 1564
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)