Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1067
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-relat...    87   2e-18
At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-relat...    87   2e-18
At4g13250.1 68417.m02060 short-chain dehydrogenase/reductase (SD...    25   7.1  
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative...    25   9.4  
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    25   9.4  

>At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-related
           contains weak similarity to Pyridoxamine 5'-phosphate
           oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
           (Swiss-Prot:P28225) [Shigella flexneri]
          Length = 466

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 40/67 (59%), Positives = 50/67 (74%)
 Frame = +2

Query: 95  YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNGG 274
           YL Q EAA +D+ L     FS+DQLMELAGLSVA++IA+V+ P  +   L +CGPGNNGG
Sbjct: 75  YLTQREAAEIDETLMGPLGFSIDQLMELAGLSVAASIAEVYKPEEYSRVLAICGPGNNGG 134

Query: 275 DGLVARK 295
           DGLVA +
Sbjct: 135 DGLVAAR 141


>At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-related
           contains weak similarity to Pyridoxamine 5'-phosphate
           oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
           (Swiss-Prot:P28225) [Shigella flexneri]
          Length = 530

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 40/67 (59%), Positives = 50/67 (74%)
 Frame = +2

Query: 95  YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNGG 274
           YL Q EAA +D+ L     FS+DQLMELAGLSVA++IA+V+ P  +   L +CGPGNNGG
Sbjct: 75  YLTQREAAEIDETLMGPLGFSIDQLMELAGLSVAASIAEVYKPEEYSRVLAICGPGNNGG 134

Query: 275 DGLVARK 295
           DGLVA +
Sbjct: 135 DGLVAAR 141


>At4g13250.1 68417.m02060 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 496

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +2

Query: 95  YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNGG 274
           +L  S+   L +D   EY   V+ L E+   SVA  IA+     T   A+++ G   +GG
Sbjct: 70  FLGFSKLGFLSKD---EYNQKVENL-EMVFSSVAVQIARYIVTMTSTGAILLIGFQLSGG 125

Query: 275 D 277
           D
Sbjct: 126 D 126


>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
            microtubule-associated motor KIF4 , Mus musculus,
            PIR:A54803
          Length = 1294

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 31   SKTV*HRNYDERYESMQYCDAVPQSVRSGSTGPGSF-H*IQV*CRSTYGTCWPEC 192
            S  V  R+Y+E  E+    DAV   V   +    S    ++  CR+T G+C P C
Sbjct: 1033 SSVVMRRSYEENSETPSD-DAVKSDVCCCTCSKSSSCKTMKCQCRATKGSCGPSC 1086


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 143 EYKFSVDQLMELAGLSVASAIAKVFPPSTHLSALIVCGPGNNGGDG 280
           + KFS ++ ++L    +  A      PS H+ A  V G   N G G
Sbjct: 295 DMKFSGNRTLKLERQGIYKASDATQLPSAHVGASYVIGHATNIGSG 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,445,417
Number of Sequences: 28952
Number of extensions: 113628
Number of successful extensions: 219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)