Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1066
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    39   7e-04
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    38   0.001
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      35   0.011
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    31   0.23 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    29   0.54 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    29   0.94 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.2  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   2.9  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   2.9  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   3.8  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 30  CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPD--KEIHCRAC 188
           C +C   V +  Q    G  WH  CF C  C++ LD        D  K+I C+ C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78



 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLD--STNLNDGPNGEIYCRGC 482
           C +C   V +  Q+      WH  CF C +C++ LD  S + +     +I+C+ C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = +3

Query: 9   KAPKGQG---CPRCGGMVFAAEQQLA-KGTMWHKKCFNCAECHRPL---DSMLACDGPDK 167
           K+P  +G   C RCG      E  ++  G MWHK CF C +C + L   D ML      +
Sbjct: 9   KSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGR 68

Query: 168 EIHCRAC 188
            + C +C
Sbjct: 69  PV-CSSC 74



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 324 CPRCGFPVYAAEQMHSKNGS-WHKRCFSCADCHRSLDSTN--LNDGPNGEIYCRGC 482
           C RCG      E   S  G  WHK CF C  C + L+ ++  L    +G   C  C
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74



 Score = 33.5 bits (73), Expect = 0.033
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 381 SWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGC 482
           S+H+ CF C DC + +  +N     N  I+C  C
Sbjct: 96  SYHRECFRCHDCRKQIIDSNFK-RDNRTIFCNDC 128



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 90  WHKKCFNCAECHRP-LDSMLACDGPDKEIHCRAC 188
           +H++CF C +C +  +DS    D  ++ I C  C
Sbjct: 97  YHRECFRCHDCRKQIIDSNFKRD--NRTIFCNDC 128


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +3

Query: 318 QGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 497
           + C  CG  + A   + +     H +CF C  C ++L+         G+ YC   Y   F
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFY-YREGKFYCHLDYHEQF 314

Query: 498 GPK 506
            P+
Sbjct: 315 SPR 317



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 24  QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
           + C  CGG + A     A G   H +CF C  C + L+  +     + + +C   Y + F
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEH-VGFYYREGKFYCHLDYHEQF 314

Query: 204 GPK 212
            P+
Sbjct: 315 SPR 317


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 276 TEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCH 419
           T   P   +K +  + C  CG  V + + + +    +H  CF C DC+
Sbjct: 100 TSVFPKAVRKVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDCN 146



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 9   KAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECH 125
           K    + C  CG  V + +   A G ++H +CF C +C+
Sbjct: 109 KVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDCN 146


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 414 CHRSLDSTNLNDGPNGEIYCRGCYGR 491
           CH    S  L D PNGE +C  C  R
Sbjct: 263 CHEPYISDELLDSPNGEWFCDDCIRR 288


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 375 NGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCY 485
           N ++  +CF+CA   R+L+  N+   P     C+ CY
Sbjct: 551 NDTYFGQCFACAVVKRTLERNNITASPE----CQQCY 583


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 78  KGTMWHKKCFNCAECHR 128
           KGT  H+K  +C ECHR
Sbjct: 11  KGTKRHRKITSCRECHR 27


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 429 QEICGSLHMRSTACATIHSLNAFVQRHKQGSHTEDN 322
           +E+C S +     C ++ +++   QRH    H+ D+
Sbjct: 187 KELCESANSTENVCFSVSTVDEIQQRHPSAGHSIDS 222


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 127 R*HSAQLK-HFLCHIVP-LANCCSAAKTIPPQRGQPW 23
           R H+ +LK HF  + VP L N     +TIPP    PW
Sbjct: 67  RHHAFELKNHFEKYYVPSLKNVVHEGQTIPPPTVLPW 103


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 342 PVYAAEQMHSKNGSWHKRCFSCA-DCHRSLDSTNL 443
           P+YA       +GS +  C+SC+  CH   D  +L
Sbjct: 45  PLYACLTCQKASGSLNAVCYSCSISCHADHDLVDL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,640
Number of Sequences: 5004
Number of extensions: 67866
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)