Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1066
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 68 7e-12
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 62 5e-10
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 59 3e-09
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 58 6e-09
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 58 1e-08
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 55 7e-08
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 41 0.001
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 38 0.011
08_01_0821 + 7966587-7966832 33 0.24
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 33 0.24
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 32 0.56
10_06_0116 + 10945231-10945501,10946018-10946241,10946329-109467... 31 0.98
08_01_1079 - 11049443-11049550,11049629-11049841,11051840-11051923 31 1.3
04_04_1117 + 31029306-31029824 31 1.3
02_05_0657 + 30673852-30674624,30674815-30674833 30 2.3
01_07_0116 + 41168750-41170054 29 3.0
03_02_0380 - 7945959-7946699 29 3.9
04_04_0975 + 29836451-29837032 29 5.2
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517... 29 5.2
04_03_0612 + 18023354-18023916,18024046-18024805 29 5.2
02_04_0583 + 24078766-24079800,24080585-24081643 29 5.2
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 28 6.9
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 28 6.9
11_06_0136 + 20481305-20481725,20483256-20483950 28 9.1
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 68.1 bits (159), Expect = 7e-12
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C V + A G +HK CF C+ C L SM + D ++C+ + +LF
Sbjct: 10 CTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGIL-SMCSYSSMDGVLYCKTHFEQLFKE 68
Query: 210 KG-FGYGHAPTLVSTDSEPTVTYTEQLP-FTGQKAAKGQGCPRCGFPVYAAEQMHSKNGS 383
G F AP STD E ++ F+G + C C VY E++ + S
Sbjct: 69 TGSFSKKFAPGCRSTDKELARAPSKICSAFSGTQ----DKCAACQKTVYPLEKLTLEGES 124
Query: 384 WHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 509
+HK CF C+ L +T+ NG +YC+ +G+ F KG
Sbjct: 125 YHKSCFKCSHGGCIL-TTSSYAALNGVLYCKIHFGQLFMEKG 165
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 62.1 bits (144), Expect = 5e-10
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 2/164 (1%)
Frame = +3
Query: 24 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
Q C CG V+ E+ A G ++H+ CF C C L + ++C+ Y ++
Sbjct: 11 QKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATL-QFSNYSSVEGVLYCKPHYDQIL 69
Query: 204 GPKG-FGYGHAPTLVSTDSEPTVTYTEQ-LPFTGQKAAKGQGCPRCGFPVYAAEQMHSKN 377
G T S +E + Q F+ C C VY E+++
Sbjct: 70 KSTGSLEKSFEGTSKSAKAEKSNGNKGQPNRFSSMFVGTQDKCVVCNKTVYPLEKVNLNG 129
Query: 378 GSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 509
S+HK CF C +L +N N G++YC+ + + F KG
Sbjct: 130 SSYHKSCFRCTHGGCTLSPSN-NVTHEGKLYCKTHHSQLFMVKG 172
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 59.3 bits (137), Expect = 3e-09
Identities = 41/160 (25%), Positives = 65/160 (40%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C V + A G +HK CF C+ C L SM D ++C+ + +LF
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTL-SMCNYSSMDGVLYCKTHFEQLFKE 68
Query: 210 KGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWH 389
G + + SE + + + C C VY E++ + S+H
Sbjct: 69 TG-SFSKKFSQGGKSSEKSDQGRAPSKLSSAFSGTQDKCAACQKTVYPLEKLTLEGESYH 127
Query: 390 KRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 509
K CF C+ L +T+ NG +YC+ + + F KG
Sbjct: 128 KSCFKCSHGGCIL-TTSSYAALNGILYCKIHFSQLFKEKG 166
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 58.4 bits (135), Expect = 6e-09
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 2/162 (1%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C V + A +HK CF C+ C L SM + D ++C+ + +LF
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTL-SMCSYSSMDGVLYCKTHFEQLFKE 68
Query: 210 KGFGYGHAPTLVSTDSEPTVTYTE-QLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSW 386
G + P+ +SE ++ F G + C C VY E+M + +
Sbjct: 69 TGTFKKNFPSGTKANSEQAKIPSKLSSVFCGTQ----DKCTACKKTVYPLEKMTMEGECY 124
Query: 387 HKRCFSCADCHRSLDSTNLN-DGPNGEIYCRGCYGRNFGPKG 509
H+ CF CA H TN + NG +YC+ + + F G
Sbjct: 125 HRTCFKCA--HGGCLLTNASYASHNGILYCQNHFWQLFKKSG 164
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 57.6 bits (133), Expect = 1e-08
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C V+ ++ A ++HK CF C C L + + + ++CR + +LF
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTL-KLANYNSFEGVLYCRPHFDQLFKR 70
Query: 210 KGF---GYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNG 380
G + P +V E TV + + A + C C VY E++ N
Sbjct: 71 TGSLDKSFEGTPKVVKP--EKTVENENAIKVSSAFAGTREKCVGCNKTVYPIERVTVNNT 128
Query: 381 SWHKRCFSCADCHRSLDSTNLN-DGPNGEIYCR 476
+HK CF C CH + N G++YC+
Sbjct: 129 MYHKSCFKC--CHGGCTISPSNYIAHEGKLYCK 159
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGP 503
C C VY +++ + N +HK CF C C +L N N G +YCR + + F
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSF-EGVLYCRPHFDQLFKR 70
Query: 504 KG 509
G
Sbjct: 71 TG 72
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 54.8 bits (126), Expect = 7e-08
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Frame = +3
Query: 24 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
Q C C V+ +Q G ++H+ CF C C L S+ + +C+ + +LF
Sbjct: 7 QKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTL-SLGNYSSIEGVPYCKPHFEQLF 65
Query: 204 GPKGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAK-----GQGCPRCGFPVYAAEQMH 368
G + + S + T +L + KAA+ + C C Y E++
Sbjct: 66 KETG---SYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEKVT 122
Query: 369 SKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 509
+ ++HK CF C+ ++ +N G +YC+ + + F KG
Sbjct: 123 VEGQAYHKSCFKCSHGGCAISPSNY-AALEGILYCKHHFSQLFKEKG 168
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 84 TMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFGYGHAPTLVSTDSEP 263
++WH +CF C C++P+ D+ H ++CY F PK + T+
Sbjct: 275 SVWHPQCFRCFACNKPISEYEFAMHEDQPYH-KSCYKDFFHPK---CDVCKNFIPTNRNG 330
Query: 264 TVTYTEQLPFTGQK---AAKGQGCPRC 335
+ Y PF QK + + G PRC
Sbjct: 331 LIEYRAH-PFWMQKYCPSHEDDGTPRC 356
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGP 503
C C P+ + + WH +CF C C++ + + + Y + CY F P
Sbjct: 257 CAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHED-QPYHKSCYKDFFHP 315
Query: 504 K 506
K
Sbjct: 316 K 316
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 37.5 bits (83), Expect = 0.011
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL-DSMLACDGPDKEIHCRACYAKLFG 206
C C + G +WH +CF C C++P+ D + G + H + CY + F
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSG-NHPYH-KTCYKERFH 615
Query: 207 PKGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQK---AAKGQGCPRC 335
PK + T+ + Y PF QK + + G PRC
Sbjct: 616 PK---CDVCKQFIPTNMNGLIEYRAH-PFWLQKYCPSHEVDGTPRC 657
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/61 (24%), Positives = 22/61 (36%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGP 503
C C + + WH CF C C++ + + N Y + CY F P
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGN-HPYHKTCYKERFHP 616
Query: 504 K 506
K
Sbjct: 617 K 617
>08_01_0821 + 7966587-7966832
Length = 81
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +3
Query: 3 SIKAPKGQGCPRCGGMVFAAEQQLAKGTMW------HKKCFNCAECHRPLDSMLA 149
S KAP CPRCGG V A + + ++ + +KK F+C+ C R L ++++
Sbjct: 24 SRKAPGA--CPRCGGAVVATDVESSRRILCLPLCLRNKKKFSCSRCRRALVAIVS 76
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +3
Query: 294 TGQKAAKGQGCPRCGFPVYAAEQMHSKN------GSWHKRCFSCADCHRSL 428
T + A G CPRCG V A + S+ +K+ FSC+ C R+L
Sbjct: 22 TASRKAPG-ACPRCGGAVVATDVESSRRILCLPLCLRNKKKFSCSRCRRAL 71
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCR 476
C C P+ + + WH +CF C C R + + +G I R
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEIPTNKDGHIEYR 228
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 84 TMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRA 185
++WH +CF C C RP+ D I RA
Sbjct: 196 SVWHPQCFRCFACDRPISEYEIPTNKDGHIEYRA 229
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 31.9 bits (69), Expect = 0.56
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 81 GTMWHKKCFNCAECHRPLDSM 143
G WH +CF C+ C P+ M
Sbjct: 131 GMYWHPQCFRCSSCRHPIREM 151
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +3
Query: 246 STDSEPTVTYTEQLPFTGQKAAKG-QGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHR 422
S + P Y P Q ++G + C C + + WH +CF C+ C
Sbjct: 87 SLNMNPYQPYNPCAPSQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRH 146
Query: 423 SL 428
+
Sbjct: 147 PI 148
>10_06_0116 +
10945231-10945501,10946018-10946241,10946329-10946725,
10946804-10946893,10947118-10947239,10947390-10947428
Length = 380
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 99 KCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFGY 224
+CF C + P++ +L D P HCR C A G F Y
Sbjct: 29 ECFQCGSINLPVEKLLF-DLP--AFHCRGCEAPFLGEMNFCY 67
>08_01_1079 - 11049443-11049550,11049629-11049841,11051840-11051923
Length = 134
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 252 DSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWHKR 395
DS+ + T + Q Q P G PV EQ S+N +W +R
Sbjct: 48 DSDDEIIATSRSTSIRQPLIHSQNVPATGVPVATLEQRASRNDAWSQR 95
>04_04_1117 + 31029306-31029824
Length = 172
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 114 AECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGF 218
A C R LD L + PD+ H CY K+ GP+ F
Sbjct: 115 ARCDRALDDWLRDESPDRLRH--LCYDKVLGPELF 147
>02_05_0657 + 30673852-30674624,30674815-30674833
Length = 263
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +3
Query: 390 KRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFGLGA 530
K C C GE+Y CY R +G G GF GA
Sbjct: 197 KACSDCVSAAAGQLKAGCGYATAGEVYLGKCYARFWGNGGGGFSSGA 243
>01_07_0116 + 41168750-41170054
Length = 434
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 213 GFG-YGHAPTLVSTDSEPTVTYTEQLPFT 296
GF +G P + T+S V YTE LP+T
Sbjct: 208 GFAAFGDTPVYIGTESLGIVNYTESLPYT 236
>03_02_0380 - 7945959-7946699
Length = 246
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 279 EQLPFTGQKAAKGQGCPRCGFP 344
+QLP+ GQ AA G G P G P
Sbjct: 4 QQLPYAGQPAAAGAGAPVPGVP 25
>04_04_0975 + 29836451-29837032
Length = 193
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 315 GQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDG 452
G G P AA+ + G+W R ++CA C R S G
Sbjct: 43 GAGRPPVPDEQLAADDVDGLGGTWPPRSYTCAFCRREFRSAQALGG 88
>04_04_0268 -
24050721-24050971,24051112-24051276,24051479-24051749,
24052344-24052517
Length = 286
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +3
Query: 93 HKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKG--FGYGHAPTLVSTDSE 260
H C + H M A D + AC+A + GP+G G H P LV+ +E
Sbjct: 126 HATCLELLKDHLQ-PGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVAASTE 182
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 620 IYIRHNCCYLLN--YLTIC*TGFNNGGILCLHETKGL 724
+++ +CC LLN LT C + N+ GI+CL K L
Sbjct: 87 LFVLSSCCTLLNDITLTFC-SKINDAGIVCLSYCKKL 122
>02_04_0583 + 24078766-24079800,24080585-24081643
Length = 697
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 20 GPRLSSLWWDGLCCRAAVGQGHYVAQEVL*LCGVSSTTGLDVSVRRSRQGDPLPRL 187
G LS W + RAA + H+V QE + G + + R+GDP P +
Sbjct: 245 GLDLSDPTWGEVVERAAEAEAHFVPQEAKPIEGKAKKAEEKLMAVDPRKGDPAPAM 300
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 75 AKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKL 200
++ T+ H C NC + + D++ D+ HC C +L
Sbjct: 155 SRNTIQHYICPNCKKRYSAFDALQLISYTDEYFHCENCNGEL 196
>03_02_0348 +
7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 590 SNGSYKVQLYIDFLCHGQCACTQTETNSFGSEVSTVATSAVNFAIGSIVQVSRIKRSVAV 411
+ GS +++L DFL + AC +E N S V + ++ I + +K S +V
Sbjct: 488 TEGSNRLELMDDFLEMEKLACLSSEANGHVSTVEKMKIDDTEASLSGITERDGVKDSQSV 547
>11_06_0136 + 20481305-20481725,20483256-20483950
Length = 371
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 626 CRLNSFQATIFFSNGSYKVQLYIDFLCHG 540
C L SFQ T++ NG +QLY+D + G
Sbjct: 180 CELESFQDTLYAENG---LQLYLDSVISG 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,852,886
Number of Sequences: 37544
Number of extensions: 492968
Number of successful extensions: 1390
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -