Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1066
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 104 9e-23
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 81 7e-16
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 6e-12
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 48 3e-11
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 49 4e-10
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08) 60 2e-09
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 46 3e-08
SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026) 52 4e-07
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 40 6e-06
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 41 1e-05
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 47 2e-05
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 44 2e-04
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_40925| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 40 0.002
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 38 0.011
SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24) 37 0.020
SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14) 36 0.035
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 34 0.11
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 33 0.19
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_2437| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22) 29 4.0
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 29 5.3
SB_24315| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) 28 7.0
SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) 28 9.3
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 28 9.3
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.3
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_48464| Best HMM Match : MFS_1 (HMM E-Value=6.9e-13) 28 9.3
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 104 bits (249), Expect = 9e-23
Identities = 44/73 (60%), Positives = 53/73 (72%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGP 503
CPRC VY AE+ + WHK C +C C++SLDSTNL D +GEIYC+GCYG+NFGP
Sbjct: 10 CPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLDSTNLAD-KDGEIYCKGCYGKNFGP 68
Query: 504 KGVGFGLGAGTLT 542
KG G+G GAG LT
Sbjct: 69 KGYGYGGGAGALT 81
Score = 85.0 bits (201), Expect = 6e-17
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
CPRC V+ AE++LA G WHK C C C++ LDS D D EI+C+ CY K FGP
Sbjct: 10 CPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLDSTNLAD-KDGEIYCKGCYGKNFGP 68
Query: 210 KGFGYG 227
KG+GYG
Sbjct: 69 KGYGYG 74
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 81.4 bits (192), Expect = 7e-16
Identities = 56/150 (37%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Frame = +3
Query: 18 KGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 197
K CPRC +AAEQ L G WHK CFNC +CH+ LDS +H A A
Sbjct: 214 KPDPCPRCEKRAYAAEQVLGAGFNWHKSCFNCYKCHKKLDSTTVA------VHKDARNAD 267
Query: 198 LFGPKGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKN 377
L Y A + D PT T +E P C RC Y AE +
Sbjct: 268 LHTRVTLIYRRA---YNADL-PTRTMSEGAPMR---------CGRCDKMCYHAEGISMAG 314
Query: 378 GSWHKRCFSCAD--CHRSLDSTNLNDGPNG 461
WHK CF+CA+ C + L+STN +G NG
Sbjct: 315 KRWHKSCFACAEVRCRKKLESTNCCEG-NG 343
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTN 440
CPRCG VY AE++ +N +HK+CFSC DC + LDSTN
Sbjct: 44 CPRCGDNVYHAEEVSMENHKFHKKCFSCKDCRKKLDSTN 82
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +3
Query: 312 KGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNL---NDGPNGEIYCR 476
K CPRC YAAEQ+ +WHK CF+C CH+ LDST + D N +++ R
Sbjct: 214 KPDPCPRCEKRAYAAEQVLGAGFNWHKSCFNCYKCHKKLDSTTVAVHKDARNADLHTR 271
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDK 167
CPRCG V+ AE+ + +HKKCF+C +C + LDS A K
Sbjct: 44 CPRCGDNVYHAEEVSMENHKFHKKCFSCKDCRKKLDSTNAASHDGK 89
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAE--CHRPLDSMLACDG---PDK 167
C RC M + AE G WHK CF CAE C + L+S C+G PDK
Sbjct: 297 CGRCDKMCYHAEGISMAGKRWHKSCFACAEVRCRKKLESTNCCEGNGIPDK 347
Score = 35.1 bits (77), Expect = 0.061
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 474 RGCYGRNFGPKGVGFGLGAGTLTM 545
R CY +N+G G G+G+GAG L +
Sbjct: 420 RACYAKNYGALGYGYGVGAGALKL 443
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 180 RACYAKLFGPKGFGYG 227
RACYAK +G G+GYG
Sbjct: 420 RACYAKNYGALGYGYG 435
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 49.2 bits (112), Expect(2) = 6e-12
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGR 491
C CG P+ +++ +WHK CFSC CHRSL S + +G YC CYG+
Sbjct: 463 CASCGEPLLEGGVLYNGE-TWHKACFSCYFCHRSLASAAFS-VRDGCRYCMECYGK 516
Score = 41.9 bits (94), Expect(2) = 6e-08
Identities = 22/58 (37%), Positives = 26/58 (44%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
C CG + L G WHK CF+C CHR L S A D +C CY K +
Sbjct: 463 CASCGEPLLEGGV-LYNGETWHKACFSCYFCHRSLAS-AAFSVRDGCRYCMECYGKFY 518
Score = 39.5 bits (88), Expect = 0.003
Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 27/185 (14%)
Frame = +3
Query: 48 MVFAAEQQLAKGTMWHKKCFNCAECHRPLDS---MLACDGP-------DKEIH-CRACYA 194
++F E +A WH F C C + ++ D P D H C AC+
Sbjct: 285 LIFTGEYTVAMNKNWHLGHFQCQTCDHSITGRQFIVRGDKPVCTDCFKDSYAHECEACHQ 344
Query: 195 KLFGPKGFG-------YGHAPTLVST------DSEPTVT-YTEQLPFTGQKAAKGQG-CP 329
K+ GP+ + H + S+ T Y +Q+ A Q C
Sbjct: 345 KI-GPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYRDQILCNNCYVANYQKECF 403
Query: 330 RCGFPVYA-AEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPK 506
CG + + A ++ WH+ CF CA+C ++ ++ + +C GCY F +
Sbjct: 404 ACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTSGFVP-KDDTFFCPGCYQSKFSKR 462
Query: 507 GVGFG 521
G
Sbjct: 463 CASCG 467
Score = 39.1 bits (87), Expect(2) = 6e-12
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLA-KGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFG 206
C CG M+ + +L G WH+ CF CA C + + D C CY F
Sbjct: 402 CFACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTS-GFVPKDDTFFCPGCYQSKFS 460
Query: 207 PK 212
+
Sbjct: 461 KR 462
Score = 32.7 bits (71), Expect(2) = 6e-08
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTN-LNDGPNGEIYCRGC 482
C C + E + ++HK CF C+ C RSL S + +G E+ C C
Sbjct: 522 CEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEGFVREG--DELLCGDC 573
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDS 140
C C + E + + +HK+CF C+ C R L S
Sbjct: 522 CEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLAS 558
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 47.6 bits (108), Expect(2) = 3e-11
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +3
Query: 18 KGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 197
+G+ C C + G WH KC C C L C D +I+C+A YA+
Sbjct: 98 QGERCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREATCYTKDGKIYCKADYAR 157
Query: 198 LFGPK 212
FG K
Sbjct: 158 QFGTK 162
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/89 (24%), Positives = 35/89 (39%)
Frame = +3
Query: 240 LVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCH 419
L++T E + L + +G+ C C + + +WH +C C C
Sbjct: 74 LMTTPCEDKAVTSPSLNAVDHVSTQGERCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCS 133
Query: 420 RSLDSTNLNDGPNGEIYCRGCYGRNFGPK 506
L +G+IYC+ Y R FG K
Sbjct: 134 DELGREATCYTKDGKIYCKADYARQFGTK 162
Score = 38.3 bits (85), Expect(2) = 3e-11
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 315 GQGCPRCGFPVYAAEQMH-SKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCR 476
G C RCG ++A + + +KN +H CF+C +C R L + +G + C+
Sbjct: 160 GTKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCK 214
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 GQGCPRCGGMVFAAEQ-QLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACY 191
G C RCG + A + + AK ++H CF C C R L + D + C+ Y
Sbjct: 160 GTKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKLHY 217
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 49.2 bits (112), Expect(2) = 4e-10
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGR 491
C CG P+ +++ +WHK CFSC CHRSL S + +G YC CYG+
Sbjct: 51 CASCGEPLLEGGVLYNGE-TWHKACFSCYFCHRSLASAAFS-VRDGCRYCMECYGK 104
Score = 41.9 bits (94), Expect(2) = 7e-08
Identities = 22/58 (37%), Positives = 26/58 (44%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
C CG + L G WHK CF+C CHR L S A D +C CY K +
Sbjct: 51 CASCGEPLLEGGV-LYNGETWHKACFSCYFCHRSLAS-AAFSVRDGCRYCMECYGKFY 106
Score = 35.9 bits (79), Expect = 0.035
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 384 WHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFG 521
WH+ CF CA+C ++ ++ + +C GCY F + G
Sbjct: 11 WHENCFRCANCGEAIGTSGFVP-KDDTFFCPGCYQSKFSKRCASCG 55
Score = 33.1 bits (72), Expect(2) = 4e-10
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +3
Query: 81 GTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPK 212
G WH+ CF CA C + + D C CY F +
Sbjct: 8 GNFWHENCFRCANCGEAIGTS-GFVPKDDTFFCPGCYQSKFSKR 50
Score = 32.7 bits (71), Expect(2) = 7e-08
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTN-LNDGPNGEIYCRGC 482
C C + E + ++HK CF C+ C RSL S + +G E+ C C
Sbjct: 110 CEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEGFVREG--DELLCGDC 161
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDS 140
C C + E + + +HK+CF C+ C R L S
Sbjct: 110 CEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLAS 146
>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
Length = 197
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNL-NDGPNGEIY 470
CPRC PVY AEQ + SWHK C +C C++ LDSTNL N N + Y
Sbjct: 5 CPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRLDSTNLTNKDANRQSY 54
Score = 49.2 bits (112), Expect = 4e-06
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDS 140
CPRC V+ AEQ A G WHK C C C++ LDS
Sbjct: 5 CPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRLDS 41
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 477 GCYGRNFGPKGVGFGLGAGTL 539
GCY + F KG GFG+GAG L
Sbjct: 173 GCYKKLFCIKGFGFGIGAGAL 193
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 45.6 bits (103), Expect(2) = 3e-08
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C CG + +A WH C C++C LD+ L C D I CR Y + F
Sbjct: 248 CAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRRFSV 307
Query: 210 K 212
K
Sbjct: 308 K 308
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 285 LPFTGQKAAKGQG-CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNG 461
+P Q K Q C CG + + + + WH C C+DC LD+ +G
Sbjct: 234 MPSADQMGDKQQAVCAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDG 293
Query: 462 EIYCRGCYGRNFGPK 506
I CR Y R F K
Sbjct: 294 VILCREDYYRRFSVK 308
Score = 30.3 bits (65), Expect(2) = 3e-08
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 324 CPRCGFPVYAAEQ-MHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNG-EIYCRGCY 485
C C + + E M +++ +H CF+C C R L +T G G IYC+ Y
Sbjct: 310 CSSCSQAISSKELVMRARDQVYHVNCFACDRCKRML-ATGEYFGMRGIRIYCKEDY 364
>SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026)
Length = 56
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 303 KAAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLND 449
K G CP+C VY+AE ++HKRCF+C C++SLDST + D
Sbjct: 5 KYGGGPKCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSLDSTTVAD 53
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +3
Query: 3 SIKAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACD 155
S K G CP+C V++AE Q G +HK+CF C C++ LDS D
Sbjct: 3 SSKYGGGPKCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSLDSTTVAD 53
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
C C ++F+ A+ WH++ F C EC R L L + HC CY K +
Sbjct: 374 CAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLGGQLYV-ARGGQPHCLECYDKYY 430
Score = 37.5 bits (83), Expect(2) = 6e-06
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 497
C C +++ +++ +WH+R F C +C R L L G+ +C CY + +
Sbjct: 374 CAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLGG-QLYVARGGQPHCLECYDKYY 430
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +3
Query: 324 CPRCGFPVYAAEQ--MHSKNGS---WHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYG 488
C RC PV E S+ G WH CF C C+ L + +G IYC Y
Sbjct: 309 CFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNNLLVDL-IYFYKDGVIYCGRHYA 367
Query: 489 RNFGPK 506
F P+
Sbjct: 368 EQFKPR 373
Score = 30.3 bits (65), Expect(2) = 6e-06
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +3
Query: 30 CPRCGGMVFAAE-----QQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYA 194
C RC V E + + WH CF C C+ L ++ D I+C YA
Sbjct: 309 CFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNNLLVDLIYF-YKDGVIYCGRHYA 367
Query: 195 KLFGPK 212
+ F P+
Sbjct: 368 EQFKPR 373
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 40.7 bits (91), Expect(2) = 1e-05
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 WHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFG 221
WH+ C C C L +C D++++CR Y K+FG K G
Sbjct: 66 WHESCLQCCICRSQLSR--SCFSKDRKLYCRTDYEKVFGTKCSG 107
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 21 GQGCPRCGGMVFAAEQQL-AKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 197
G C C + A E + A G ++H CF C C L+ D +++C+A +AK
Sbjct: 102 GTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADFAK 161
Query: 198 L 200
L
Sbjct: 162 L 162
Score = 26.2 bits (55), Expect(2) = 1e-05
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +3
Query: 315 GQGCPRCGFPVYAAEQ-MHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGR 491
G C C + A E M + +H CF C C L+ + ++YC+ + +
Sbjct: 102 GTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADFAK 161
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 46.8 bits (106), Expect = 2e-05
Identities = 33/129 (25%), Positives = 50/129 (38%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
CP CG +V + ++QLAK + H K F C +CH+ ++ H K
Sbjct: 92 CPTCG-IVCSDKKQLAKHSKTHLKTFTCKKCHQIFNNRSKLIKHQMLAHSMQIGRKRHRK 150
Query: 210 KGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWH 389
+ H+ T + T E + QL A+ CP C E+ S H
Sbjct: 151 ETSSSTHSITYMCTTCEKVFKSSHQLERHKSTHARVYKCPHCKKVFSDKEKRKDHYISAH 210
Query: 390 KRCFSCADC 416
K+ + C C
Sbjct: 211 KKEYRCGKC 219
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHR 422
CP CG +Q+ +K+ H + F+C CH+
Sbjct: 92 CPTCGIVCSDKKQL-AKHSKTHLKTFTCKKCHQ 123
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +3
Query: 6 IKAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRA 185
+ +P C CG + ++ LA WH CF+C +CH L L G D + +C
Sbjct: 81 VSSPYLHTCAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLLS--LEYMGMDGKPYCEK 138
Query: 186 CYAKLFG 206
Y +LFG
Sbjct: 139 DYQELFG 145
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFG 500
C CG + ++ + + WH CFSC CH L + G +G+ YC Y FG
Sbjct: 89 CAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLLSLEYM--GMDGKPYCEKDYQELFG 145
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 43.6 bits (98), Expect = 2e-04
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 7/163 (4%)
Frame = +3
Query: 30 CPRCGGMVFAAE-----QQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYA 194
C RC G V + ++L + WH KCF C E L ++ C D EI+C +
Sbjct: 80 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDDEIYCCRHWG 138
Query: 195 KLFGPKGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAK-GQGCPRCGFPVYAAE-QMH 368
+ P+ G +E E+L G + + C C E ++
Sbjct: 139 EKLKPRCAG-------CEEMNEGFTLKDEKLICHGCRGINPSKVCAACNGDFAPGEKKVG 191
Query: 369 SKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 497
++ ++H +CF C +C + + S + C C+ F
Sbjct: 192 YQSKTFHDKCFICDECKQPIGSKQFIRRDERRL-CNNCFDSKF 233
Score = 36.7 bits (81), Expect = 0.020
Identities = 31/128 (24%), Positives = 56/128 (43%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C +C ++ + Q A G+ +H +CF C C +PL + + C+ CY + +
Sbjct: 237 CVKCNQVIKTSSVQHA-GSTYHSECFTCHHCDKPLAGSPFTKQEGRNV-CQNCYRERYAK 294
Query: 210 KGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWH 389
+ G L+ +++ V Y E+ F + C +C P+ A E+ ++G
Sbjct: 295 R---CGACHNLIEGNTK-FVAYDEKY-FHRECFT----CCKCNKPL-AGEKFRIRDG--E 342
Query: 390 KRCFSCAD 413
K C C D
Sbjct: 343 KICLPCDD 350
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 315 GQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYC 473
G C CG VY E++ ++ +H+ CF C+ C+ SL + P E +C
Sbjct: 608 GTACLICGERVYLMERLVAERRLFHRACFRCSRCNSSLRAGTYTFFPESESFC 660
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 21 GQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHC 179
G C CG V+ E+ +A+ ++H+ CF C+ C+ L + P+ E C
Sbjct: 608 GTACLICGERVYLMERLVAERRLFHRACFRCSRCNSSLRAGTYTFFPESESFC 660
>SB_40925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 30
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 372 KNGSWHKRCFSCADCHRSLDSTN 440
+N +HK+CFSC DC + LDSTN
Sbjct: 2 ENHKFHKKCFSCKDCRKKLDSTN 24
Score = 31.9 bits (69), Expect = 0.57
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 90 WHKKCFNCAECHRPLDS 140
+HKKCF+C +C + LDS
Sbjct: 6 FHKKCFSCKDCRKKLDS 22
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +3
Query: 318 QGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 497
Q C C P+ + +G WH +C C+DC L T G+++C+ + R +
Sbjct: 3 QQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPL--TERCFSREGKLFCKTDFYRRY 60
Query: 498 GPKGVGFGLG 527
G K G G
Sbjct: 61 GTKCSGCDQG 70
Score = 32.3 bits (70), Expect(2) = 0.025
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 87 MWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFG 221
+WH +C C++C PL C + ++ C+ + + +G K G
Sbjct: 24 VWHAQCVQCSDCKCPLTE--RCFSREGKLFCKTDFYRRYGTKCSG 66
Score = 23.0 bits (47), Expect(2) = 0.025
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 315 GQGCPRCGFPVYAAEQMH-SKNGSWHKRCFSCADCHRSLDS-TNLNDGPNGEIYCRGCY 485
G C C + + + +K+ +H CF C+ C R + + L +G CR Y
Sbjct: 61 GTKCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDY 119
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 37.5 bits (83), Expect = 0.011
Identities = 44/182 (24%), Positives = 62/182 (34%), Gaps = 30/182 (16%)
Frame = +3
Query: 18 KGQGCPRCGGMVFAAEQQL-----AKGTMWHKKCFNCAECHRPL--------DSMLACDG 158
+G C CG V A + + T WH CF C C L DS + C
Sbjct: 74 EGYSCKECGECVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVDLIYFYKDSKVYCGR 133
Query: 159 PDKEI---HCRACYAKLFGPKGF----GYGHAPTLVSTDSEPTV-----TYTEQLPFTGQ 302
E C AC +F + H + + + + P+
Sbjct: 134 HHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMRYVMRDNKPYCCH 193
Query: 303 --KAAKGQGCPRCGFPVYA-AEQMHSKNGSWH--KRCFSCADCHRSLDSTNLNDGPNGEI 467
++ + C CG P+ A QM WH CFSC C ++L +GEI
Sbjct: 194 CFESLYAEFCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCGKALLGLPFLP-KSGEI 252
Query: 468 YC 473
YC
Sbjct: 253 YC 254
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCY 485
C C ++A + +++ WH + F C +C L N + YC C+
Sbjct: 143 CAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMRYVMRDN-KPYCCHCF 195
>SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)
Length = 251
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +3
Query: 30 CPRCGGMVFAAE-----QQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHC 179
C RC G V + ++L + WH KCF C E L ++ C D EI+C
Sbjct: 193 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDAEIYC 246
>SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14)
Length = 82
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
C CG E + A G +H CF C C L + G E++C+ Y F
Sbjct: 11 CATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERLSTDFYARG--SELYCKKDYLSKF 66
Score = 34.7 bits (76), Expect = 0.081
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 497
C CG P E ++ +H CF C C L + G E+YC+ Y F
Sbjct: 11 CATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERLSTDFYARG--SELYCKKDYLSKF 66
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 35.1 bits (77), Expect = 0.061
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKE-IHCRACYAKL-F 203
C CG V E+ + ++HK CF CA C+ L+ C PD + +C Y +
Sbjct: 245 CDSCGKSVDILERVAVENHVFHKACFVCAICNVWLNHFNYCFVPDHDKFYCVQHYQDIEN 304
Query: 204 GPKGFGYG 227
+G G G
Sbjct: 305 ATEGLGSG 312
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGP-NGEIYC 473
C CG V E++ +N +HK CF CA C+ L+ N P + + YC
Sbjct: 245 CDSCGKSVDILERVAVENHVFHKACFVCAICNVWLNHFNYCFVPDHDKFYC 295
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 21 GQGCPRCGGMVFAAEQQL-AKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 197
G C C + A E + A G ++H CF C C L+ D +++C+A +AK
Sbjct: 4 GTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADFAK 63
Query: 198 L 200
L
Sbjct: 64 L 64
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 33.5 bits (73), Expect = 0.19
Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 11/177 (6%)
Frame = +3
Query: 9 KAPKGQGCPRCG------GMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKE 170
K P G P G M+ + + + + + K CA C++P+ + C K
Sbjct: 242 KTPSGSAAPSVGKVSQLDNMLGSLQSDMTRQGVSTTKKGMCAACNKPIIGQV-CTALGKT 300
Query: 171 IH-----CRACYAKLFGPKGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRC 335
H C AC A L G + F D +P Y E+ + A + C C
Sbjct: 301 WHPEHFACVACEAPL-GTQNF--------FERDGKP---YCER-DYHDTFAPR---CAYC 344
Query: 336 GFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPK 506
P+ + + + + +WH F CA+C T ++ +G+ +CR Y F P+
Sbjct: 345 NGPILDS-CVTALDQTWHPEHFVCAECGNPFGDTGFHE-RDGKPFCREDYYAMFAPR 399
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 60 AEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 197
A+ +WHK CF C C L +M G K +C A Y K
Sbjct: 203 AQPPARPAAVWHKGCFKCESCGMTL-NMKTYKGYQKLPYCDAHYPK 247
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGS-WHKRCFSCADCHRSLDSTNLNDGPNGEIYC 473
C C + A E + G +H CF+C CH L + NG ++C
Sbjct: 708 CAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRLFC 758
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQL-AKGTMWHKKCFNCAECHRPL 134
C C ++ A E + G ++H CF C CH L
Sbjct: 708 CAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQL 743
>SB_2437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 260 TDSYIHRTTSIHWPKGSQRARLSSVWLPCLCR*TNAFKEWIVAQAVLLMCR 412
T S+IH +TS + KG R VW C C + + L MCR
Sbjct: 160 TLSFIHSSTSSVYVKGQTTERAIGVWNSCDCNERQICRVNFIDDTPLRMCR 210
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFG 500
C CG PV +H+ +WH F CA C + + G YC Y +G
Sbjct: 81 CFCCGRPV-EDRVVHALGKAWHVEHFVCAKCEKPFYGHRYYE-RKGLAYCETHYNELYG 137
>SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22)
Length = 81
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 90 WHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFG 206
+H + F CA C + L+ + DK +C C+ KLFG
Sbjct: 44 FHPEHFVCAFCLKQLNKGTFKEQNDKP-YCHPCFVKLFG 81
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = +3
Query: 90 WHKKCFNCAECH---RPLDSMLACDGPDKEIHCRACY 191
WH CF+C CH + D +HC C+
Sbjct: 2053 WHDDCFSCVVCHVRFGTAEQRSPLKITDSLLHCENCF 2089
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGS--WHKRCFSCADCH 419
C C P+ + ++ WH CFSC CH
Sbjct: 2031 CASCSQPIRKSMAVYVSELKRYWHDDCFSCVVCH 2064
>SB_24315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 348 YAAEQMHSKNGSWHKRCFSCAD 413
Y AEQ+ +++ SWH++C C D
Sbjct: 59 YTAEQLLTEHASWHRKC--CQD 78
>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
Length = 841
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -2
Query: 221 TESLGPEKLSVTSAAMD--LLVGTVAR*HRVQWSMTLRTVKA 102
T+ GP +SV+ +A++ ++VG AR R+ W +T R + A
Sbjct: 777 TKKFGPNAISVSLSALNRHVVVGLAAR--RIHWHLTSRQMMA 816
>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
Length = 185
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 5 HQGSEGP-RLSSLWWDGLCCRAAVGQGHYVAQ 97
H S G R SS WW CCR +G V +
Sbjct: 29 HYASRGSLRSSSCWWPPFCCRPVHFRGKTVVK 60
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 315 GQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRN 494
GQG G P + M + S + D + DS +DG N C G YG+
Sbjct: 312 GQGSSNSGVPACDPQSMKQELKSEDEENM---DSEQRQDSPESHDGDNVNGPCPGWYGKG 368
Query: 495 FG 500
+G
Sbjct: 369 YG 370
>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 777
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWH--KKCFNCAECHRPLDSML 146
C CG FA + L + + H +K +NC EC P D ++
Sbjct: 388 CDECG-KCFALKAHLKRHLVIHSGRKPYNCDECEFPRDKLV 427
>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 415 QSAHEKHRLCHDPFFECICSAA*TGKPHR 329
+ A +++ LC DP IC + KPHR
Sbjct: 70 RDARDRNALCLDPGLSAICDNSVPHKPHR 98
>SB_48464| Best HMM Match : MFS_1 (HMM E-Value=6.9e-13)
Length = 475
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 129 PLDSMLACDGPDKEIHCRACYAKLFGPKGFGYGHAPTLVSTDSEPTVTYTE-QLPFTG 299
PL+S+LA ++ R + +L+G GFG G T + D VTY LP G
Sbjct: 159 PLESILAASIVNQVGVERYGHQRLYGAFGFGIGSLVTGFAMDQTSHVTYIPGSLPHHG 216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,573,989
Number of Sequences: 59808
Number of extensions: 554928
Number of successful extensions: 1683
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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