Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1066
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.43 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 189  NKRGNGSPCRDRRTLTSSPVVDDTPHS*STSCAT 88
            NK G+G    +RR  T+  V +  PH   T+C T
Sbjct: 1061 NKVGSGPMSEERRQHTAEGVPEQPPH--DTTCTT 1092


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 278 RTTSIHWPKGSQRARLSSVWLPC 346
           RT  + W +G++   +S+  LPC
Sbjct: 431 RTEELIWARGTKDIPISACSLPC 453


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 278 RTTSIHWPKGSQRARLSSVWLPC 346
           RT  + W +G++   +S+  LPC
Sbjct: 521 RTEELIWARGTKDIPISACSLPC 543


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 162  RDRRTLTSSP 133
            RDR+TLTS+P
Sbjct: 1438 RDRKTLTSAP 1447


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
 Frame = +3

Query: 96  KKCFNCAECHR------PLDSMLACDGPDKEIHCRAC 188
           +K F C ECH+       L + +     +K  HC  C
Sbjct: 7   EKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,029
Number of Sequences: 438
Number of extensions: 4728
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)