Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1066
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 67 1e-11
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 60 2e-09
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 60 2e-09
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 56 3e-08
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 55 4e-08
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 47 1e-05
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 38 0.007
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 37 0.016
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 34 0.088
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 33 0.27
At5g55490.1 68418.m06911 expressed protein 32 0.35
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 32 0.35
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot... 31 0.62
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 31 0.82
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 31 1.1
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar... 29 3.3
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar... 29 3.3
At3g11540.2 68416.m01408 gibberellin signal transduction protein... 28 5.8
At3g11540.1 68416.m01407 gibberellin signal transduction protein... 28 5.8
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 28 5.8
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 2/164 (1%)
Frame = +3
Query: 24 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
Q C C V+A E A G +HK CF C C L + + + ++C+ + +LF
Sbjct: 8 QKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL-QLSSYSSMEGVLYCKPHFEQLF 66
Query: 204 GPKG-FGYG-HAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKN 377
G F +P + S P +T T G+ + + C C VY E++ ++
Sbjct: 67 KESGSFNKNFQSPAKSADKSTPELTRTPS-RVAGRFSGTQEKCATCSKTVYPIEKVTVES 125
Query: 378 GSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 509
++HK CF C+ + +N G +YC+ + + F KG
Sbjct: 126 QTYHKSCFKCSHGGCPISPSNY-AALEGILYCKHHFAQLFKEKG 168
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 59.7 bits (138), Expect = 2e-09
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C V+ + +G +HK CF C+ C+ L + D ++C+ + +LF
Sbjct: 11 CKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTL-VICNYSSMDGVLYCKTHFEQLFKE 69
Query: 210 KGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWH 389
G + T T+ T + + C C VY E+M + S+H
Sbjct: 70 SGNFSKNFQTAGKTEKSNDATKAPN-RLSSFFSGTQDKCAACKKTVYPLEKMTMEGESYH 128
Query: 390 KRCFSCADCHRSLDSTNLNDGP-NGEIYCRGCYGRNFGPKG 509
K CF CA H T+ + +G +YC+ + + F KG
Sbjct: 129 KTCFRCA--HSGCPLTHSSYAALDGVLYCKVHFSQLFLEKG 167
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLF 203
C C V+ E+ +G +HK CF CA PL S A DG ++C+ +++LF
Sbjct: 107 CAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDG---VLYCKVHFSQLF 163
Query: 204 GPKGFGYGH 230
KG Y H
Sbjct: 164 LEKG-NYNH 171
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 2/164 (1%)
Frame = +3
Query: 24 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
Q C C V+ E A G +HK CF C+ C L + + ++CR + +LF
Sbjct: 8 QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRL-QLSNYSSMEGVVYCRPHFEQLF 66
Query: 204 GPKG-FGYG-HAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKN 377
G F +P TD G + C C VY E++ ++
Sbjct: 67 KESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTVES 126
Query: 378 GSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 509
+HK CF C+ + +N G +YC+ + + F KG
Sbjct: 127 QCYHKSCFKCSHGGCPISPSNY-AALEGILYCKHHFAQLFKEKG 169
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +3
Query: 285 LPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGE 464
+ FTG + Q C C VY E + + S+HK CF C+ C L +N + G
Sbjct: 1 MSFTGTQ----QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYS-SMEGV 55
Query: 465 IYCRGCYGRNFGPKG 509
+YCR + + F G
Sbjct: 56 VYCRPHFEQLFKESG 70
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 55.6 bits (128), Expect = 3e-08
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 1/161 (0%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C V+ + +G +HK CF C C L M D ++C+ + +LF
Sbjct: 10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTL-QMSNYSSMDGVLYCKTHFEQLFKE 68
Query: 210 KG-FGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSW 386
G F P +P +T T + C C VY E++ + +
Sbjct: 69 SGNFSKNFQP---GKTEKPELTRTPS-KISSIFCGTQDKCAACEKTVYPLEKIQMEGECF 124
Query: 387 HKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 509
HK CF CA +L ++ + +YCR + + F KG
Sbjct: 125 HKTCFRCAHGGCTLTHSSY-ASLDSVLYCRHHFNQLFMEKG 164
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 55.2 bits (127), Expect = 4e-08
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 3/163 (1%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C V+ + +G +HK CF C C L + D ++C+ + +LF
Sbjct: 10 CKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTL-VISNYSSMDGVLYCKPHFEQLFKE 68
Query: 210 KGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKG--QGCPRCGFPVYAAEQMHSKNGS 383
G ++ + +E + + P G C C VY E++ + S
Sbjct: 69 SG---NYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVTMEGES 125
Query: 384 WHKRCFSCADCHRSLDSTNLNDGP-NGEIYCRGCYGRNFGPKG 509
+HK CF C H T+ + NG +YC+ + + F KG
Sbjct: 126 YHKTCFRCT--HSGCPLTHSSYASLNGVLYCKVHFNQLFLEKG 166
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 306 AAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCY 485
A Q C C VY +++ + N +HK CF C C +L +N N G +YCR +
Sbjct: 4 AGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSF-EGVLYCRPHF 62
Query: 486 GRNFGPKG 509
+NF G
Sbjct: 63 DQNFKRTG 70
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 3/154 (1%)
Frame = +3
Query: 24 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 203
Q C C V+ ++ A ++HK CF C C L + + + ++CR + + F
Sbjct: 8 QKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTL-KLSNYNSFEGVLYCRPHFDQNF 66
Query: 204 GPKGF---GYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSK 374
G + P + D + + C C VY E++
Sbjct: 67 KRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKVSVN 126
Query: 375 NGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCR 476
+HK CF C ++ +N G++YC+
Sbjct: 127 GTLYHKSCFKCTHGGCTISPSNY-IAHEGKLYCK 159
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAE--CHRPLDSMLACDGPDKEIHCRACYAKLF 203
C C V+ E+ GT++HK CF C C + +A +G +++C+ + +L
Sbjct: 110 CVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEG---KLYCKHHHIQLI 166
Query: 204 GPKG 215
KG
Sbjct: 167 KEKG 170
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 37.9 bits (84), Expect = 0.007
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Frame = +3
Query: 84 TMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFGYGHAPTLVSTDSEP 263
++WH +CF C C +P+ + H +ACY + + PK H + T+
Sbjct: 190 SLWHPECFRCYGCSQPISEYEFSTSGNYPFH-KACYRERYHPKCDVCSH---FIPTNHAG 245
Query: 264 TVTYTEQLPFTGQK---AAKGQGCPRCGFPVYAAEQMHSKNGSW------HKRCFSCAD 413
+ Y PF QK + + PRC + E+M +N + K C C D
Sbjct: 246 LIEYRAH-PFWVQKYCPSHEHDATPRC----CSCERMEPRNTRYVELNDGRKLCLECLD 299
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/61 (22%), Positives = 23/61 (37%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGP 503
C C + ++ N WH CF C C + + + N + + CY + P
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFH-KACYRERYHP 230
Query: 504 K 506
K
Sbjct: 231 K 231
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 39 CGGMVFAAEQQLAK---GTMWHKKCFNCAECHRPL 134
CGG FA E + G +WH CF C CH+P+
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSL---DSTNLNDGPNGEIYCRGCYGR 491
C C F V ++ WH CF C CH+ + D N G+ + + CY R
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFH-KSCYER 343
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 34.3 bits (75), Expect = 0.088
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Frame = +3
Query: 81 GTMWHKKCFNCAECHRP-LDSMLACDGPDKEIHCRACYAKLFGPKGFGYGHAPTLVSTDS 257
G +WH +CF C C +P +D + G ++ H + CY + PK + T+
Sbjct: 2 GGVWHPECFCCNACDKPIIDYEFSMSG-NRPYH-KLCYKEQHHPK---CDVCHNFIPTNP 56
Query: 258 EPTVTYTEQLPFTGQK---AAKGQGCPRCGFPVYAAEQMHSKNGSW------HKRCFSCA 410
+ Y PF QK + + G PRC + E+M K+ + K C C
Sbjct: 57 AGLIEYRAH-PFWMQKYCPSHERDGTPRC----CSCERMEPKDTKYLILDDGRKLCLECL 111
Query: 411 D 413
D
Sbjct: 112 D 112
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 378 GSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPK 506
G WH CF C C + + + N Y + CY PK
Sbjct: 3 GVWHPECFCCNACDKPIIDYEFSMSGN-RPYHKLCYKEQHHPK 44
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL 134
C C V E G +WH CF C C +P+
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPI 381
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSL---DSTNLNDGPNGEIYCRGCYGR 491
C C V E ++ WH CF C C + + + N G+ + + CY R
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELENHVSNSRGKFH-KSCYER 404
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = -2
Query: 647 GSSSYVLCRLNSFQATIFFSNGSYKVQLYIDFLCHGQCACTQTETNSFGSEVSTVATSAV 468
G ++ C+ S + ++ ++Y+DFL C Q ++N+F +E+ +
Sbjct: 61 GRPAFPTCKDESVMMSCLKKLDDHEHKIYLDFLLETNTICQQLQSNAFKNEIERLVNELK 120
Query: 467 NFA 459
N A
Sbjct: 121 NTA 123
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 209
C C + A G++WH +CF C C P+ D + ++ + CY +L P
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISD--LRGMYHKPCYKELRHP 1297
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/54 (22%), Positives = 22/54 (40%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCY 485
C C + +++ WH +CF C C + ++D +Y + CY
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG--MYHKPCY 1291
>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
similar to Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
contains Pfam profile PF01369: Sec7 domain
Length = 1698
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 27 GCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLA-CDGPD 164
G RCG ++ + ++ K W K F + C LD + A D PD
Sbjct: 9 GATRCGRVIGPSLDKIIKNAAWRKHTFLVSACKSVLDKLEALSDSPD 55
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 321 GCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTN-LNDGPN 458
G RCG + + KN +W K F + C LD L+D P+
Sbjct: 9 GATRCGRVIGPSLDKIIKNAAWRKHTFLVSACKSVLDKLEALSDSPD 55
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL 134
C C + A G WH +CF C C +P+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPI 235
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 324 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPN-GEIYC 473
C C + +H+ +WH CF C C + + + P E YC
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC 251
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 30 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSM-LACDGPDKE 170
CP C + +A + H C CAE P+D + L CD P K+
Sbjct: 221 CPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVDKVCLVCDKPCKD 268
>At5g59400.2 68418.m07444 expressed protein predicted protein,
Arabidopsis thaliana
Length = 301
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +3
Query: 306 AAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCH 419
A KG CP CG V+A + N S HK ADCH
Sbjct: 225 ALKGD-CPNCGEEVFAFVRSDQSNRSAHK-----ADCH 256
>At5g59400.1 68418.m07443 expressed protein predicted protein,
Arabidopsis thaliana
Length = 299
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +3
Query: 306 AAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCH 419
A KG CP CG V+A + N S HK ADCH
Sbjct: 225 ALKGD-CPNCGEEVFAFVRSDQSNRSAHK-----ADCH 256
>At3g11540.2 68416.m01408 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 732
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +3
Query: 27 GCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFG 206
G P C G FA + A MW K C R ++ + KE+H +K G
Sbjct: 638 GSPVCNGPSFAVGLESAYRNMWKKYCKGEVPSLRRMEML------QKEVHDDPLISKDLG 691
Query: 207 PKGFGY-GHA-PTLVSTDSEP 263
P G A P+L + S P
Sbjct: 692 PSRVSVTGEATPSLKANGSAP 712
>At3g11540.1 68416.m01407 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515 TPR
Domain
Length = 914
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +3
Query: 27 GCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFG 206
G P C G FA + A MW K C R ++ + KE+H +K G
Sbjct: 820 GSPVCNGPSFAVGLESAYRNMWKKYCKGEVPSLRRMEML------QKEVHDDPLISKDLG 873
Query: 207 PKGFGY-GHA-PTLVSTDSEP 263
P G A P+L + S P
Sbjct: 874 PSRVSVTGEATPSLKANGSAP 894
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 447 DGPNGEIYCRGCYGRNFGPKGVGFGLGAG 533
DG G RG G N G +GV FGLG G
Sbjct: 619 DGRKGGKKGRGGGGGNKGVRGVDFGLGIG 647
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,063
Number of Sequences: 28952
Number of extensions: 380554
Number of successful extensions: 1082
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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