Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1065
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    27   2.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   3.1  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   7.2  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   9.5  

>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 326 CNKXYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 186
           C + +L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 492 ILHRHPNGLPTLQ*RLTQPVLNWLFLLLSKYEFIL 596
           IL +HP+ L T+    TQ +LN    LL K E +L
Sbjct: 826 ILQKHPSFLETMYPDFTQLILNRAINLLGKPERLL 860


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -1

Query: 275 LVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMYI*KPEARSESGPRPV*QSVGTIRGRA 96
           LVF S    IQ   K  SE+ T  ++LS ++L  +  PE   ++GP  + Q     R   
Sbjct: 126 LVFMSSSSLIQSQQKI-SENVTPALILSGIMLGGVCVPELLKKAGPIAIAQGRKAPRQDP 184

Query: 95  DEA 87
           DE+
Sbjct: 185 DES 187


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 470 FINLIKYNNIKIPCFILQN 414
           F+  +  N++KIPCFIL +
Sbjct: 307 FVGGVLENHLKIPCFILHS 325


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 281 KTLVFYSHYMNIQKLPKTESEHPTFH 204
           K++VF + Y +I K PK   E   FH
Sbjct: 26  KSIVFRTQYESIFKNPKHHGEKKPFH 51


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 479 IAFNNSS*ASKWFTYTSMKTHTTSVK 556
           +A N SS +SKW T+T     TT++K
Sbjct: 734 VAKNKSSHSSKWPTHTLSPIITTALK 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,217
Number of Sequences: 5004
Number of extensions: 56594
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)