Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1065
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587...    30   1.4  
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588...    29   4.2  
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112...    28   7.4  
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225...    28   7.4  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   9.8  

>06_01_0785 -
           5873244-5873357,5873458-5873562,5874333-5874424,
           5874525-5874594,5875080-5875202,5875287-5875372,
           5875547-5875648,5875874-5876096,5876217-5876282,
           5876407-5876497,5876574-5876701,5877734-5877749,
           5878171-5878318,5878440-5878511,5878586-5878690,
           5879122-5879291,5880093-5880424
          Length = 680

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 101 YLVWYPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 253
           Y  +YP S    +G     PP+ + T G       G LD  +Q+W   G++
Sbjct: 424 YAYFYPPSNPNFQGLPDEKPPLLVKTHGGPTAETRGILDLSVQYWTSRGWA 474


>06_01_0786 -
           5881178-5881303,5881523-5881627,5882078-5882169,
           5882267-5882336,5882639-5882724,5882916-5883017,
           5883375-5883597,5883693-5883758,5883896-5883986,
           5884019-5884057,5885401-5885548,5885623-5885715,
           5885782-5885886,5886645-5886826,5886912-5887084
          Length = 566

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 101 YLVWY-PHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 253
           Y  +Y PH+  + +G S   PP+ + T G       G LD  +Q+W   G++
Sbjct: 347 YAYFYAPHN-HIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWA 397


>05_06_0212 +
           26410330-26410419,26410562-26410846,26411005-26411208,
           26411636-26411692,26411859-26412926
          Length = 567

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 169 KNRRRGVRAALAQCDRVWVPYEVEQMRLDXECDXPAETSELVMSXAVLQHPK 14
           K   R V  ++A+  +V  P      R + +C+ P  T+E V +   +Q P+
Sbjct: 333 KRNLRKVTNSMAEASKVSTPATEIPERQEVQCEKPQRTAEEVPNYPEIQEPQ 384


>02_05_0420 +
           28821717-28821854,28821944-28822210,28822299-28822568,
           28822656-28823246,28823336-28823479
          Length = 469

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 107 VW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFG 247
           +W YP  V + E   H++  +F+     G T      D  ++FW +FG
Sbjct: 398 LWKYPSMVKMAELTGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 445


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 107  VW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFG 247
            +W YP  V + E   H++  +F      G T      D  ++FW +FG
Sbjct: 3303 LWKYPSMVKMAELTGHTSRVLFTAQSPDGLTVASAAADETLRFWNVFG 3350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,199,850
Number of Sequences: 37544
Number of extensions: 342159
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)