Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1065
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)               28   7.6  

>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 246 PKITQN*IRASNFPHGLVCPTPNVYIKTGGAE 151
           PK T+  +RA   PH  V   P V   TGG E
Sbjct: 258 PKTTRKPVRAMETPHAEVLIQPKVTGATGGGE 289


>SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -1

Query: 269 FYSHYMNIQKLPKTESEHPTFHMVLSALLLMYI*KPEARSESGPRPV*QSVG 114
           +YS Y  ++K+PK +S   T   ++  +   +      RS++GP+ + +  G
Sbjct: 384 YYSKYPFVRKIPKGQSNSNTIIQMMKQIFSEHGVPTIVRSDNGPQYISKDTG 435


>SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 163 RRRGVRAALAQCDRVWVPYEVEQMRLDXECDXPAETSELVMSXAVLQHP 17
           ++RGV+  L   D++W   + E  RL   C+   E  E  ++     HP
Sbjct: 78  KKRGVKVDLGFPDQMWDTPDAEVTRLKNRCEYMVEQHEDDITEWYWNHP 126


>SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)
          Length = 166

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +2

Query: 476 FIAFNNSS*ASKWFTYTSMKTHTTSVKLVIFAVIEIRIYFGXVTLILLL 622
           FI  N+S  +SK    T++ + TTS  L  F +I I + +  VTL+++L
Sbjct: 120 FILINSSVSSSK----TAISSSTTSPPLSTFPIITIIVVYFAVTLMVVL 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,948,966
Number of Sequences: 59808
Number of extensions: 390210
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)