Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1065
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   2.7  
DQ990877-1|ABJ90145.1|  105|Anopheles gambiae putative salivary ...    24   3.6  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    24   3.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   8.4  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
           C++ YL I  NIT+++  +FY+
Sbjct: 226 CDEPYLDITFNITMRRKTLFYT 247


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
           C++ YL I  NIT+++  +FY+
Sbjct: 226 CDEPYLDITFNITMRRKTLFYT 247


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
           C++ YL I  NIT+++  +FY+
Sbjct: 222 CDEPYLDITFNITMRRKTLFYT 243


>DQ990877-1|ABJ90145.1|  105|Anopheles gambiae putative salivary
           secreted peptide protein.
          Length = 105

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 92  HLLYLVWYPHSVTLGEGRSHSAPP 163
           HL YL+ Y     LG G     PP
Sbjct: 38  HLSYLIDYLVQFVLGSGNDRKTPP 61


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 299 LNITIQKTLVFYSHYMNIQKLPKTESE 219
           L   ++KT VF+S   N+Q L  T  E
Sbjct: 129 LKHVLEKTQVFFSDKSNVQNLEATGGE 155


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 514 VYLHFNEDSHNQC*IGYFCC 573
           V L F+  + NQC IGY  C
Sbjct: 79  VTLIFDNSNPNQCPIGYETC 98


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,776
Number of Sequences: 2352
Number of extensions: 13138
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)