Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1065
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    28   6.6  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    28   6.6  
Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    27   8.7  

>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 155 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 244
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 155 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 244
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical
           protein C07E3.9 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 205 TWSCLPYS*CIYKNRRRGVRAALAQCDRVWV 113
           +WSC+  S  I  ++  G +AAL  CD++ V
Sbjct: 95  SWSCMN-STAICSDKNMGCKAALCDCDKIVV 124


>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 245 QKLPKTESEHPTFHMVLS 192
           QK+ KT   HP FH VL+
Sbjct: 21  QKIAKTREHHPNFHAVLA 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,572
Number of Sequences: 27780
Number of extensions: 316255
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)