Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1065
(650 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 26 0.36
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.84
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.84
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.84
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.84
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 24 1.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 24 1.1
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 23 2.6
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 3.4
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 3.4
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 3.4
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 3.4
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 5.9
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.9
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 5.9
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 21 7.8
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 21 7.8
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 21 7.8
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 21 7.8
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 21 7.8
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 25.8 bits (54), Expect = 0.36
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 62 GWXVAFXIQPHLLYLVWYPH 121
G+ +A +QP L++ +W PH
Sbjct: 162 GFLLAGIVQPFLIHWIWTPH 181
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.84
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
C++ YL I NIT+++ +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.84
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
C++ YL I NIT+++ +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 0.84
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
C++ YL I NIT+++ +FY+
Sbjct: 223 CDEPYLDITFNITMRRKTLFYT 244
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.6 bits (51), Expect = 0.84
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 589 NSYFDNSKNNQFNTGCVSLH 530
N+Y +N+ NN +N C L+
Sbjct: 336 NNYNNNNYNNNYNNNCKKLY 355
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 74 AFXIQPHLLYLVWYPHSVTLGEGRS 148
A +Q H+ Y W S +GEG+S
Sbjct: 1276 ATDLQQHVEYQFWVTGSTRVGEGQS 1300
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 74 AFXIQPHLLYLVWYPHSVTLGEGRS 148
A +Q H+ Y W S +GEG+S
Sbjct: 1272 ATDLQQHVEYQFWVTGSTRVGEGQS 1296
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 296 NITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMY 174
N+T+ + S+Y I L + PT+ L LMY
Sbjct: 628 NVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMY 668
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 589 NSYFDNSKNNQFNTGCVSLH 530
N+Y N NN +N C L+
Sbjct: 94 NNYKYNYNNNNYNNNCKKLY 113
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 589 NSYFDNSKNNQFNTGCVSLH 530
N+Y N NN +N C L+
Sbjct: 94 NNYKYNYNNNNYNNNCKKLY 113
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 589 NSYFDNSKNNQFNTGCVSLH 530
N+Y N NN +N C L+
Sbjct: 94 NNYKYNYNNNNYNNNCKKLY 113
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 589 NSYFDNSKNNQFNTGCVSLH 530
N+Y N NN +N C L+
Sbjct: 94 NNYKYNYNNNNYNNNCKKLY 113
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 332 IKCNKXYL*IGLNITIQKTLVFYS 261
I C + Y I NIT+++ +FY+
Sbjct: 217 ICCEEPYPDIVFNITLRRKTLFYT 240
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
C++ Y I NIT+++ +FY+
Sbjct: 218 CDEPYPDIFFNITLRRKTLFYT 239
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 326 CNKXYL*IGLNITIQKTLVFYS 261
C + Y I NIT+++ +FY+
Sbjct: 232 CTEPYSDITFNITMRRKTLFYT 253
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.4 bits (43), Expect = 7.8
Identities = 6/19 (31%), Positives = 12/19 (63%)
Frame = +2
Query: 83 IQPHLLYLVWYPHSVTLGE 139
I+P+ Y +W+P + G+
Sbjct: 139 IEPYNNYYIWHPGKIVNGK 157
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 21.4 bits (43), Expect = 7.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 202 WSCLPYS*CIYKNRRRGVRAALAQCDRVWV 113
WS Y C + A+ +CDR+WV
Sbjct: 110 WSFAKYDDC--SGIVSASKLAIDKCDRLWV 137
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.4 bits (43), Expect = 7.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 202 WSCLPYS*CIYKNRRRGVRAALAQCDRVWV 113
WS Y C + A+ +CDR+WV
Sbjct: 110 WSFAKYDDC--SGIVSASKLAIDKCDRLWV 137
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.4 bits (43), Expect = 7.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 202 WSCLPYS*CIYKNRRRGVRAALAQCDRVWV 113
WS Y C + A+ +CDR+WV
Sbjct: 110 WSFAKYDDC--SGIVSASKLAIDKCDRLWV 137
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.4 bits (43), Expect = 7.8
Identities = 6/19 (31%), Positives = 12/19 (63%)
Frame = +2
Query: 83 IQPHLLYLVWYPHSVTLGE 139
I+P+ Y +W+P + G+
Sbjct: 139 IEPYNNYYIWHPGKIVNGK 157
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,393
Number of Sequences: 438
Number of extensions: 4192
Number of successful extensions: 25
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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