Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1063
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 30 0.37
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 29 0.48
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 29 0.64
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 29 0.85
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 26 4.5
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 4.5
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 26 4.5
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 23 4.7
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 6.0
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 6.0
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 25 7.9
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 7.9
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 29.9 bits (64), Expect = 0.37
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 481 HNEQLDQKRQDQRRHSEAESQKHGDIRPDQDVPSRVLREQLVVYL*RHPQKQGKPIRDYR 660
H QL +Q Q++H + ++ + G Q+ S+ HP KQ PI D+R
Sbjct: 260 HYRQLQSVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDT------HPPKQQGPISDFR 313
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 53 KMERDKYEKEKTRLQTFIDEVDSSIQKKRD 142
+ + K EKEK R++ FI +SS ++KRD
Sbjct: 298 QQKEKKKEKEKERMKAFIPPEESSKKRKRD 327
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 38 VLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYD 154
V+EEI++ R+K + E RL + E+ +KR+ E D
Sbjct: 825 VIEEIRIYREKIQTETQRLSSLQTELSRLRDEKRNSEVD 863
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 28.7 bits (61), Expect = 0.85
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Frame = +2
Query: 17 RFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYD-QKYEEMVLKLIEF 193
R S EL+ ++ E K +++ LQ D+V+ + K + ++ D QK + L +++
Sbjct: 268 RDSDWELI--SLRNELSKLDEKILSLQRETDDVNIAQNKSKLIQRDLQKVLDYKLGILQS 325
Query: 194 AKKDF----IYKGFDPLIERLKALSNV---HVEGRKRKVVNIEDIL 310
K D D ++ L+ NV H+EGRK +V +E+ L
Sbjct: 326 LKNDGPNGPSASAIDNDLKMLEQQLNVLGRHLEGRKSQVAKLEERL 371
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 83 KTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLI 187
K ++TF +VD SI ++D DQ +E KL+
Sbjct: 87 KGYMRTFGKDVDYSITTEQDAAMDQAIQEAAEKLV 121
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 4.5
Identities = 27/96 (28%), Positives = 43/96 (44%)
Frame = +2
Query: 38 VLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKDFIYK 217
VLEE +E DK E L T + D K+ LE+ +E +LK + A++
Sbjct: 294 VLEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEF---RKEQLLKQLSNAQEK---- 346
Query: 218 GFDPLIERLKALSNVHVEGRKRKVVNIEDILNVYTQ 325
+E + N +E K+++ NI + V TQ
Sbjct: 347 -----LEHEQHSRNQKLEAAKQRMDNIREEYKVITQ 377
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 11 LQRFSGHELVLEEIKMERDKYEKEKTRLQTFID 109
+ R ++ I E+++YEKE L TF+D
Sbjct: 146 MSRRGKKSIIHSAIIQEKERYEKESQELFTFLD 178
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 298 RRHPERIHADRHHK 339
R+ ER H DRHH+
Sbjct: 165 RKSKERRHRDRHHR 178
Score = 21.0 bits (42), Expect(2) = 4.7
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +1
Query: 457 QERGPQREHNEQLDQKRQDQRRHSEAESQKHGDIRPDQD 573
Q+R +R NEQ +++ R S + + R D
Sbjct: 181 QDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHND 219
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 53 KMERDKYEKEKTRLQTFIDEVDSSIQKKRDLE 148
K +DK +KE+ +T +D DS KKR E
Sbjct: 202 KHSKDKLKKEEKEKKTAVDVSDSVNGKKRKTE 233
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 44 EEIKMERDKYEKEKTR----LQTFIDEVDSSIQKKR 139
EE + E D +E R ++ FI E++SSIQK+R
Sbjct: 320 EEEENEADDETRENKRQNRLVREFISELESSIQKRR 355
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 7.9
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Frame = +2
Query: 20 FSGHELVLEEIKMERDKYEK--EKTRLQTFIDEV---DSSIQKKRDLEYDQKYEEMVLKL 184
F H + +E + ++Y E L DEV ++ K L + QKY++ +
Sbjct: 139 FLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHRW 198
Query: 185 IEFAKKDFI--YKGFDPLIERLKALSNVHVEGRKRKVVNIEDILNVYTQID 331
+EFA + F +PL ++ + + + K+ + +VY+ D
Sbjct: 199 LEFAPQSFSSNTNSVNPLQTTFESTNIQEISQSRTKISKPKFKFSVYSDAD 249
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Frame = +2
Query: 119 SSIQKKRDLEYDQKYEEMVLKL--------IEFAKKDFIYKGFDPLIERLKALSNVHVE 271
S + KR +++ +Y ++ L I + ++ I K F+PLIE+L +L+ +++E
Sbjct: 226 SRAETKRTVQFSPQYRVLLSLLVGEGNHEPINWDIENAIQKYFNPLIEQLASLAKLNIE 284
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 53 KMERDKYE--KEKTRLQTFIDEVDSSIQKKRDLEY--DQKYEEMVLKLI 187
K+ RD + KEK+ FIDE+D+ K+ D E D++ + +L+L+
Sbjct: 265 KLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,487
Number of Sequences: 5004
Number of extensions: 45590
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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