Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1063
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 32 0.45
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 32 0.45
U80953-5|AAO61446.3| 317|Caenorhabditis elegans Dachsund transc... 31 0.60
U80953-4|AAB52555.2| 420|Caenorhabditis elegans Dachsund transc... 31 0.60
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 31 0.79
Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical pr... 31 1.0
U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine rec... 31 1.0
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 31 1.0
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 30 1.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 30 1.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 30 1.4
Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical pr... 30 1.8
L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy c... 30 1.8
L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated p... 30 1.8
AF016443-9|AAC24273.1| 364|Caenorhabditis elegans Hypothetical ... 30 1.8
AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy... 30 1.8
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 29 2.4
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 2.4
U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine rece... 29 2.4
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z92777-7|CAI79120.1| 294|Caenorhabditis elegans Hypothetical pr... 29 3.2
U29380-10|AAO38582.1| 454|Caenorhabditis elegans Hypothetical p... 29 4.2
U29380-9|AAA68745.1| 472|Caenorhabditis elegans Hypothetical pr... 29 4.2
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 28 5.6
U80836-7|AAB37893.3| 451|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical ... 28 5.6
AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical ... 28 5.6
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 28 5.6
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 5.6
Z70270-9|CAI79144.1| 261|Caenorhabditis elegans Hypothetical pr... 28 7.4
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 28 7.4
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 28 7.4
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024843-8|AAM48560.1| 726|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024843-7|AAF60843.2| 743|Caenorhabditis elegans Hypothetical ... 28 7.4
Z81560-6|CAB04544.1| 164|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 9.8
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical... 27 9.8
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 31.9 bits (69), Expect = 0.45
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 7 RAAEVQRTRARSRGDKDGKRQIREREDTPADLHR*SGQLDTEETRSRVRSKIRGDGLKIN 186
R+ + +R R+RS GD+D +R+ R RED R + D + R R R RGD + +
Sbjct: 162 RSRDRKRRRSRS-GDRDRRRRSRSRED-----RRDRDRRDRDRDRDRGRGDRRGDDRQRD 215
Query: 187 R 189
R
Sbjct: 216 R 216
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 31.9 bits (69), Expect = 0.45
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 7 RAAEVQRTRARSRGDKDGKRQIREREDTPADLHR*SGQLDTEETRSRVRSKIRGDGLKIN 186
R+ + +R R+RS GD+D +R+ R RED R + D + R R R RGD + +
Sbjct: 162 RSRDRKRRRSRS-GDRDRRRRSRSRED-----RRDRDRRDRDRDRDRGRGDRRGDDRQRD 215
Query: 187 R 189
R
Sbjct: 216 R 216
>U80953-5|AAO61446.3| 317|Caenorhabditis elegans Dachsund
transcription factor homologprotein 1, isoform b
protein.
Length = 317
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 32 ELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKK 202
EL ++ K ER++ KE++ +Q + +Q++RDL +K E K F K+
Sbjct: 230 ELASQQFKHEREELWKERSEIQVLRESFHKIVQEERDLR--KKLETQNKKCTAFEKR 284
>U80953-4|AAB52555.2| 420|Caenorhabditis elegans Dachsund
transcription factor homologprotein 1, isoform a
protein.
Length = 420
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 32 ELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKK 202
EL ++ K ER++ KE++ +Q + +Q++RDL +K E K F K+
Sbjct: 333 ELASQQFKHEREELWKERSEIQVLRESFHKIVQEERDLR--KKLETQNKKCTAFEKR 387
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 31.1 bits (67), Expect = 0.79
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 41 LEEIKMERDK----YEKEKTRLQTFIDEVDSSIQK---KRDLEYDQKYEEMVLKLIEFAK 199
L+E+KM K YEKEK L+ +DE ++++ + EYD K EM +L +
Sbjct: 252 LDEMKMNFKKFTREYEKEKRELEKQMDEQRQTLEQDNARNQSEYDMKMREMREELQNLER 311
Query: 200 K 202
K
Sbjct: 312 K 312
>Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical
protein C33D9.8 protein.
Length = 604
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 50 IKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKK 202
I + KYEK K + ++++ Q RD + +KY+EM L+ +E KK
Sbjct: 30 IDQNKKKYEKLKIKYSESLNQITDKNQLIRD--WTRKYDEMELRNMENEKK 78
>U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine
receptor, class v protein33 protein.
Length = 341
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 432 SRLSLPWYSCVYFLMISL*YFSKRHNSSYVYFVMSICV 319
S +SLP Y V+ ++ L Y SK +NS++ ++ C+
Sbjct: 23 SIVSLPLYLVVFVCLLRLRYVSKTYNSTFYSILLQHCI 60
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 30.7 bits (66), Expect = 1.0
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +2
Query: 5 RXLQRFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKL 184
R QR E +LEE ++E+DK +EK RL E + + KK LE D+K EE +
Sbjct: 103 REKQRIE-RERILEEKRLEKDKLAEEK-RLDKEKKEKE-RLDKK--LEEDKKKEEKRKEA 157
Query: 185 IEFAKKD 205
E KKD
Sbjct: 158 EEKKKKD 164
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 32 ELVLEEIKMERDKYEKEK----TRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAK 199
E L+EIK++RD Y+K+K L ++++ I+ ++DLE + L +
Sbjct: 759 EQQLKEIKIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTI 818
Query: 200 KDFIYKGFDPLIERLKALSNVHVEGRKRKVVNIEDILN 313
D Y+ L+ R + ++G + K+ ++E+ L+
Sbjct: 819 SD--YESQINLLRRHNDELDTTIKGHQGKITHLENELH 854
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 32 ELVLEEIKMERDKYEKEK----TRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAK 199
E L+EIK++RD Y+K+K L ++++ I+ ++DLE + L +
Sbjct: 832 EQQLKEIKIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTI 891
Query: 200 KDFIYKGFDPLIERLKALSNVHVEGRKRKVVNIEDILN 313
D Y+ L+ R + ++G + K+ ++E+ L+
Sbjct: 892 SD--YESQINLLRRHNDELDTTIKGHQGKITHLENELH 927
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 32 ELVLEEIKMERDKYEKEK----TRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAK 199
E L+EIK++RD Y+K+K L ++++ I+ ++DLE + L +
Sbjct: 832 EQQLKEIKIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTI 891
Query: 200 KDFIYKGFDPLIERLKALSNVHVEGRKRKVVNIEDILN 313
D Y+ L+ R + ++G + K+ ++E+ L+
Sbjct: 892 SD--YESQINLLRRHNDELDTTIKGHQGKITHLENELH 927
>Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical
protein T28C6.7 protein.
Length = 459
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/100 (28%), Positives = 47/100 (47%)
Frame = +2
Query: 32 ELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKDFI 211
E LE+I KYE E+ RLQ +D + SS + ++E + + V L E K +
Sbjct: 267 ETTLEDIN---GKYEDERDRLQEEVDTLRSS--RNWEIEQNALLRDQVAHLKEKVHK--L 319
Query: 212 YKGFDPLIERLKALSNVHVEGRKRKVVNIEDILNVYTQID 331
D ++LS+ E +K + +ED+L + I+
Sbjct: 320 TTELDASEVAKRSLSSEVDESKKLMELMVEDLLQAESAIN 359
>L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy
chain protein.
Length = 815
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 59 ERDKYEKEKTRLQTFIDEVDSSIQK-KRDLE 148
E+ KYE+E+ +L +DE D IQK ++LE
Sbjct: 427 EKKKYEEERVKLYQQLDEKDDEIQKVSQELE 457
>L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated
protein 116 protein.
Length = 815
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 59 ERDKYEKEKTRLQTFIDEVDSSIQK-KRDLE 148
E+ KYE+E+ +L +DE D IQK ++LE
Sbjct: 427 EKKKYEEERVKLYQQLDEKDDEIQKVSQELE 457
>AF016443-9|AAC24273.1| 364|Caenorhabditis elegans Hypothetical
protein C17E7.4 protein.
Length = 364
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRLQTFIDEVDSSIQK 133
LE++K ERD+Y+KE R + ++++S ++
Sbjct: 196 LEQLKKERDQYKKEMRRYKAKCEQLESKCEQ 226
>AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy
chain protein.
Length = 815
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 59 ERDKYEKEKTRLQTFIDEVDSSIQK-KRDLE 148
E+ KYE+E+ +L +DE D IQK ++LE
Sbjct: 427 EKKKYEEERVKLYQQLDEKDDEIQKVSQELE 457
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 457 QERGPQREHNEQLDQKRQDQRRHSEAESQKH 549
+ER Q+E E L++ RQ + R E +KH
Sbjct: 339 RERATQKERREHLERHRQAEARAKALEKEKH 369
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 457 QERGPQREHNEQLDQKRQDQRRHSEAESQKH 549
+ER Q+E E +++ RQ + R E +KH
Sbjct: 260 RERATQKERREHIERHRQAEARAKALEKEKH 290
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQK 160
+E+++ ++ + EKEK +Q DE +++ ++ L DQ+
Sbjct: 1223 IEQLQKQKGRIEKEKGHMQREFDESSAALDQEAKLRADQE 1262
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQK 160
+E+++ ++ + EKEK +Q DE +++ ++ L DQ+
Sbjct: 1223 IEQLQKQKGRIEKEKGHMQREFDESSAALDQEAKLRADQE 1262
>U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine
receptor, class v protein28 protein.
Length = 312
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 432 SRLSLPWYSCVYFLMISL*YFSKRHNSSYVYFVMSICVYTFRMSSILT 289
S LSLP Y V ++ L YFSK + +++ ++ C+ ++ T
Sbjct: 16 SILSLPLYFGVLICLLRLRYFSKTYKTTFYTILLQHCIADIISMTVFT 63
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 22 QRTRARSRGDKDGKRQIREREDTPADLHR*SGQLDTEETRSRVRSKIRG 168
+R+R+RSR K + + + RED D R + D E R S G
Sbjct: 3 RRSRSRSRSPKRDREERKRREDRDRDRERKRDRKDRERKRRHRSSSSEG 51
>Z92777-7|CAI79120.1| 294|Caenorhabditis elegans Hypothetical
protein C17H1.10 protein.
Length = 294
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEY-DQKYEEMVLKLIEFAKK 202
+ E+K +R +EK++ + E +++K+ E QK E+ +LK+ E K
Sbjct: 52 VREVKKQRANFEKQRAEYRVEHHETMEKLKQKKIEEIAQQKKEQQILKMEEMKAK 106
>U29380-10|AAO38582.1| 454|Caenorhabditis elegans Hypothetical
protein ZK546.14b protein.
Length = 454
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 454 PQERGPQREHNEQLDQKRQDQRRHSEAESQKHGDIRPDQDVPSRVLREQ 600
P ++ +E + DQK+QD++ S++E D ++ V ++Q
Sbjct: 90 PADQNKNKEKVVKKDQKKQDKKADSDSEEDDSSDDEEKEETDEPVAKKQ 138
>U29380-9|AAA68745.1| 472|Caenorhabditis elegans Hypothetical
protein ZK546.14a protein.
Length = 472
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 454 PQERGPQREHNEQLDQKRQDQRRHSEAESQKHGDIRPDQDVPSRVLREQ 600
P ++ +E + DQK+QD++ S++E D ++ V ++Q
Sbjct: 108 PADQNKNKEKVVKKDQKKQDKKADSDSEEDDSSDDEEKEETDEPVAKKQ 156
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQK 160
+E+++ ++ + EKEK +Q DE +++ ++ L DQ+
Sbjct: 1223 IEQLQKQKGRIEKEKGHMQREFDESCAALDQEAKLRADQE 1262
>U80836-7|AAB37893.3| 451|Caenorhabditis elegans Hypothetical
protein B0432.13 protein.
Length = 451
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 44 EEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAK 199
++I E+DKY +E +LQ I+ + S ++ L+ + + + LK EF K
Sbjct: 122 KKIIREKDKYRQEIPKLQATINHLTISSEETAYLKRELQESKNRLKTCEFYK 173
>AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical
protein F53H1.4b protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 5 RXLQRFSGHELVLEEIKME---RDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMV 175
R R SG ++L +++ ++K EKEK +L+ E + QKK + E +K +E
Sbjct: 183 RGAPRASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEE-EKAKKLKEKE 241
Query: 176 LKLIEFAKK 202
KL E +K
Sbjct: 242 EKLKEKEEK 250
>AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical
protein F53H1.4c protein.
Length = 368
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 5 RXLQRFSGHELVLEEIKME---RDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMV 175
R R SG ++L +++ ++K EKEK +L+ E + QKK + E +K +E
Sbjct: 219 RGAPRASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEE-EKAKKLKEKE 277
Query: 176 LKLIEFAKK 202
KL E +K
Sbjct: 278 EKLKEKEEK 286
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 5 RXLQRFSGHELVLEEIKME---RDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMV 175
R R SG ++L +++ ++K EKEK +L+ E + QKK + E +K +E
Sbjct: 219 RGAPRASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEE-EKAKKLKEKE 277
Query: 176 LKLIEFAKK 202
KL E +K
Sbjct: 278 EKLKEKEEK 286
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 44 EEIKMERDKYEKEKTRLQTFIDEVDSSI-QKKRDLEYDQKYEEMVLKLIEFAKKD 205
EE+K +R K +K + R + E DSS + + +++QK ++ V K + +KKD
Sbjct: 252 EELKEDRRKEKKREMRAVRNVSEDDSSTSSESEESDFEQKKKKKV-KKSKKSKKD 305
>Z70270-9|CAI79144.1| 261|Caenorhabditis elegans Hypothetical
protein C53D6.11 protein.
Length = 261
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 348 YVYF-VMSICVYTFRMSSILTTFRLR 274
Y++ ++ +CV TF +S++L FRLR
Sbjct: 8 YIFLGLIELCVSTFILSTVLNNFRLR 33
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 358 QFLVCVFCDVDLRVYVQDVFYIDDLPFASLD 266
Q L+C + L+ ++D ID+ P A+ D
Sbjct: 441 QSLICDYPQTSLKCLIEDTILIDETPIAAFD 471
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 358 QFLVCVFCDVDLRVYVQDVFYIDDLPFASLD 266
Q L+C + L+ ++D ID+ P A+ D
Sbjct: 441 QSLICDYPQTSLKCLIEDTILIDETPIAAFD 471
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQK 160
LEE+K+ER + + I D+ + LEYDQ+
Sbjct: 1104 LEEVKLERSEQDPNSMACLLEISTADNFENAENQLEYDQQ 1143
>AC024843-8|AAM48560.1| 726|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3c protein.
Length = 726
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Frame = +2
Query: 2 RRXLQRFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLK 181
R +Q + E LE +K E KY+KEK + + + + K+ + +++ E++
Sbjct: 462 RARIQGEAEREKKLELMKAEEQKYQKEKEMKEFEEQQKKAMMTKQVEDDFNVMVEQLEKM 521
Query: 182 LIEFAKK------DFIYKG--FDPLIERLKALSNVHVEGRKRKVVNIEDILNVYT 322
+E K D IY F + L+++ E +++ V ++ +L+ T
Sbjct: 522 FVEVRSKGLNHILDMIYGSATFKTIQLYSSTLTSLSFEQKQKLVQDLRSLLDSVT 576
>AC024843-7|AAF60843.2| 743|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3a protein.
Length = 743
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Frame = +2
Query: 2 RRXLQRFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLK 181
R +Q + E LE +K E KY+KEK + + + + K+ + +++ E++
Sbjct: 462 RARIQGEAEREKKLELMKAEEQKYQKEKEMKEFEEQQKKAMMTKQVEDDFNVMVEQLEKM 521
Query: 182 LIEFAKK------DFIYKG--FDPLIERLKALSNVHVEGRKRKVVNIEDILNVYT 322
+E K D IY F + L+++ E +++ V ++ +L+ T
Sbjct: 522 FVEVRSKGLNHILDMIYGSATFKTIQLYSSTLTSLSFEQKQKLVQDLRSLLDSVT 576
>Z81560-6|CAB04544.1| 164|Caenorhabditis elegans Hypothetical
protein K02E2.7 protein.
Length = 164
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/79 (21%), Positives = 36/79 (45%)
Frame = +2
Query: 92 LQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKDFIYKGFDPLIERLKALSNVHVE 271
LQ + E+D + + + DQ+ ++ ++ +E + I L LKA N+ E
Sbjct: 47 LQLHVQEMDKNTMLTENFDQDQEELKLFVQELEQNAAETINNSSHQLENALKAEENIETE 106
Query: 272 GRKRKVVNIEDILNVYTQI 328
+ + + E+ N +T +
Sbjct: 107 ISEEEASDDEEEDNFHTML 125
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
protein T06E4.1 protein.
Length = 1295
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 65 DKYEKEKTRLQTFIDEVDSSIQK-KRDLE-YDQKYEEM 172
+ YEK+ LQ +E D +QK K D+E KY E+
Sbjct: 341 EDYEKKFVELQEMKEEADEQLQKAKEDIETLQMKYVEL 378
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 623 CLHK*TTSCSRNTLEGTSWSGRISPCFCDS 534
C H T C N+ S SG++ CF +S
Sbjct: 68 CCHSQNTQCGTNSSPQVSASGQVVTCFTNS 97
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 62 RDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKD--FIYKGFDPLI 235
+D Y++E +EVD + ++ ++KY+E L+E KD I +GF L
Sbjct: 104 KDPYDQEDEDADRIYNEVDDRLDERHKERREKKYKE----LVELFHKDRPKIQQGFQDLK 159
Query: 236 ERL 244
+L
Sbjct: 160 RQL 162
>AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical
protein Y48G1C.8 protein.
Length = 828
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 481 HNEQLDQKRQDQRRHSEAESQKHGDIRPDQDVPSRVLREQLV 606
HN+ LDQ + +H + + Q D+ QD +L + L+
Sbjct: 614 HNDSLDQIQLQHDQHQQQQHQLMQDVSIAQDAQGHLLDDDLL 655
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,370,956
Number of Sequences: 27780
Number of extensions: 254036
Number of successful extensions: 1275
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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