Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1063
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56040.1 68414.m06434 U-box domain-containing protein contain... 36 0.034
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 32 0.32
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit... 32 0.32
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 32 0.42
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 31 0.97
At1g22275.1 68414.m02784 expressed protein 31 0.97
At3g58360.1 68416.m06505 meprin and TRAF homology domain-contain... 29 2.2
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 29 2.2
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 3.0
At5g55820.1 68418.m06956 expressed protein 29 3.9
At1g50420.1 68414.m05651 scarecrow-like transcription factor 3 (... 29 3.9
At2g02890.1 68415.m00239 F-box family protein contains Pfam PF00... 28 5.2
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 28 5.2
At3g21740.1 68416.m02743 expressed protein contains Pfam PF05634... 28 6.8
At2g16450.1 68415.m01884 F-box family protein contains Pfam PF00... 28 6.8
At1g72250.1 68414.m08353 kinesin motor protein-related 28 6.8
At1g52520.1 68414.m05929 far-red impaired responsive protein, pu... 28 6.8
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 27 9.0
At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta... 27 9.0
At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative si... 27 9.0
At4g27010.1 68417.m03885 expressed protein ; expression support... 27 9.0
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 27 9.0
At2g16220.1 68415.m01859 F-box family protein 27 9.0
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor... 27 9.0
>At1g56040.1 68414.m06434 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 437
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 50 IKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYE-EMVLK 181
+ +ERD+ EK K +L+T +E+D++ K E+++KYE EM+L+
Sbjct: 211 LAIERDRIEKVKIQLETVENEIDNTRLKAE--EFERKYEGEMILR 253
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRL----QTFID--EVDSSIQKKRDLEYDQKYEEM--VLKLIEF 193
LEE+K++ + YE+E+ L +T+ D E +SS++K + ++ EE+ V L+EF
Sbjct: 267 LEEVKLKLETYEREQENLSSEVRTWQDKYEQESSLRKLSEYALSREQEELQIVKGLLEF 325
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/71 (26%), Positives = 38/71 (53%)
Frame = +2
Query: 29 HELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKDF 208
H+ L E+K+ K ++ T++ F+ + + +QK D++ ++K E + +E KD
Sbjct: 866 HDESLAELKLIHAKMKECDTQISGFVTDQEKCLQKLSDMKLERKKLENEVVRMETDHKDC 925
Query: 209 IYKGFDPLIER 241
K D L+E+
Sbjct: 926 SVK-VDKLVEK 935
>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 314
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 523 HSEAESQKHGDIRPDQDVPSRVLREQLVVYL*RHPQKQGKPIRDYR*LGGVSTKPIE 693
H ++ +QK G++R D D+P + V+L G+ RDY K +E
Sbjct: 12 HEDSTTQKTGELRLDSDIPMSKISSDDEVFLAPEMNAFGRQFRDYTDTNSERQKSVE 68
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 29 HELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKDF 208
H+ L E+K+ K ++ T++ I E + +QK D++ D+K E + +E K+
Sbjct: 863 HDQSLSELKLIHAKMKECDTQISGSIAEQEKCLQKISDMKLDRKKLENEVTRMEMEHKNC 922
Query: 209 IYKGFDPLIER 241
K D L+E+
Sbjct: 923 SVK-VDKLVEK 932
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 30.7 bits (66), Expect = 0.97
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 457 QERGPQREHNEQLDQKRQDQRRHSEAESQKHGDIRPDQ 570
Q++ Q H++Q Q++Q Q++ + + Q+H + P Q
Sbjct: 126 QQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQPPSQ 163
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Frame = +2
Query: 62 RDKYEKEKTRLQTFIDEV-DSSIQKKRDL-EYDQKYEEMVLKLIEFAKKDFIYK-GFDPL 232
++K EKEKT +Q DE+ + ++ ++++ + D+ ++ +L E KK+ +K FD L
Sbjct: 255 QEKLEKEKTNVQLSSDELFEKLVRSEQEVKKLDELVHYLIAELTELDKKNLTFKEKFDKL 314
>At3g58360.1 68416.m06505 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 298
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 32 ELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEE 169
E L EI +++K E +TR+Q +E++S QK DLE + E+
Sbjct: 237 EKKLVEISEKKNKEEAGETRMQEINEELESLKQKCLDLEAQLEKEK 282
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 23 SGHELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAK 199
S L E+ + +D +EK KT+L+ ++ +S+Q K LE ++ E LK + K
Sbjct: 811 SSSSLAKEKENLRKD-FEKTKTKLKDTESKLKNSMQDKTKLEAEKASAERELKRLHSQK 868
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 41 LEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLE 148
+EE+K++R+K E ++ L+ DE+ I++ + LE
Sbjct: 734 VEELKVQREKLETQRHMLRAERDEIRHEIEELKKLE 769
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Frame = +2
Query: 47 EIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYE--EMVLKLIEFAKKDFIYKG 220
EIK++R++ E+E L+ ++E+ +K + + E E+ ++ E K + +
Sbjct: 715 EIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVA 774
Query: 221 FDPLIERLKALSNVH-----VEGRKRKVVNIEDILNV 316
D + LSN+ V K+KVV+ +D L++
Sbjct: 775 LDDMSMAKMQLSNLERSWEKVSALKQKVVSRDDELDL 811
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 14 QRFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYE-EMVLKLIE 190
Q+ + +L E +K+ER K E+E + Q + +KK++ E K E E K E
Sbjct: 1534 QKENDRKLKKEAMKLERAKQEQENLKKQEIEKKKKEEDRKKKEAEMAWKQEMEKKKKEEE 1593
Query: 191 FAKKDF 208
+K+F
Sbjct: 1594 RKRKEF 1599
>At1g50420.1 68414.m05651 scarecrow-like transcription factor 3
(SCL3) identical to GB:AAD24404 GI:4580515 from
[Arabidopsis thaliana] (Plant J. 18 (1), 111-119 (1999))
Length = 482
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 164 EEMVLKLIEFAKKDFIYKGFDPLIERLKALSNVHVEGRKRKVVNIEDILNVYT 322
E+M +LIE A+K I F+P++ RL L+ + + + + + +L ++T
Sbjct: 208 EQMAHRLIEEAEKLDIPFQFNPVVSRLDCLNVEQLRVKTGEALAVSSVLQLHT 260
>At2g02890.1 68415.m00239 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 531
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 197 KKDFIYKGFDPLIERLKALSNVHVEGRKRKVV 292
+K + + GFDP+ ++ KALS +V+G R V
Sbjct: 297 RKAYSFFGFDPIDKQYKALSLPYVDGPGRSKV 328
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 23 SGHELVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKK 202
SG + EEI +E K + R ++ DE+ + +KR + + K EE K KK
Sbjct: 40 SGSSDIEEEISVECPKRVANQRRKRSKADEIKTKSSRKRKCDDENKCEENEKKQRSSVKK 99
>At3g21740.1 68416.m02743 expressed protein contains Pfam PF05634:
Arabidopsis thaliana protein of unknown function
(DUF794)
Length = 337
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/86 (27%), Positives = 37/86 (43%)
Frame = +2
Query: 62 RDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKDFIYKGFDPLIER 241
R K ++ + Q SS K L+ +K M+LK IE KD+ K P+ E
Sbjct: 5 RHKLWRKLSSFQRASYSTTSSRNNKLKLDDLRKLRPMILKRIENRAKDYPVKEIVPVAEE 64
Query: 242 LKALSNVHVEGRKRKVVNIEDILNVY 319
+ + RK + NI +L V+
Sbjct: 65 I-------LIARKNLISNIAALLKVF 83
>At2g16450.1 68415.m01884 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 427
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 197 KKDFIYKGFDPLIERLKALSNVHVEG 274
+K F + GFDP+ ++ KALS V+ G
Sbjct: 157 RKAFSFFGFDPIDKQYKALSMVYPSG 182
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 38 VLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKR----DLEYDQKYEEMVLKLIEFAKK 202
++EE+K+E + +E + E+ + + +K L Q+ E+MVL + F KK
Sbjct: 366 MVEELKLENQQKTRECEEALNSLSEIQNELMRKSMHVGSLGTSQREEQMVLFIKRFDKK 424
>At1g52520.1 68414.m05929 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 703
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 44 EEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKK 202
E +K ++Y ++T L+ F+D+ + ++QKK E E L E K
Sbjct: 470 ETLKPFFERYVHKQTPLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTK 522
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +2
Query: 38 VLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQKYEEMVLKLIEFAKKDFIYK 217
++ + RD+ + K E+ S Q + YE L LI + + +
Sbjct: 613 IVTRVSSARDEAGRNKRNAIDIGSEISSCYQTDGNERKQVNYEPHDLSLIPERETEKLSA 672
Query: 218 GFDPLIE-RLKAL-SNVHVEGRKRKVV 292
G+DP +E KAL N G +K+V
Sbjct: 673 GYDPALEFGSKALKKNSQAAGGAKKLV 699
>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal
domain-containing protein
Length = 1104
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 46 GDKDGKRQIREREDTPADLHR*SGQLDTEETRSRVRSKIRGDGL 177
G+K ++ I TP D+H+ + + S+ RGDGL
Sbjct: 822 GEKMSEKTITRMRKTPQDIHKPTVNVKKHGRNDESLSQSRGDGL 865
>At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase (EC 2.4.1.14)
isoform 1 - Citrus unshiu, EMBL:AB005023
Length = 1043
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 35 LVLEEIKMERDKYEKEKTRLQTFIDEVDSSIQKKRDLEYDQ---KYEEMVLKLI--EFAK 199
++L + RDK E+ + + +E++S+ + R +E ++ EMV+ E +
Sbjct: 334 MLLTGHSLGRDKLEQLLRQGRLSKEEINSTYKIMRRIEGEELSLDVSEMVITSTRQEIDE 393
Query: 200 KDFIYKGFDPLIER 241
+ +Y GFDP++ER
Sbjct: 394 QWRLYDGFDPILER 407
>At4g27010.1 68417.m03885 expressed protein ; expression supported by
MPSS
Length = 2535
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 20 FSGHELVLEEIKMERDKYEKEKTRLQTFIDE 112
FSGH V EEI+ + D + E + F+ +
Sbjct: 994 FSGHSSVTEEIRSKMDNRDMESSAFSIFLKQ 1024
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 53 KMERDKYE--KEKTRLQTFIDEVDSSIQKKRDLEY--DQKYEEMVLKLI 187
K+ RD ++ KEK FIDE+D+ K+ D E D++ + +L+L+
Sbjct: 251 KLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 299
>At2g16220.1 68415.m01859 F-box family protein
Length = 407
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 197 KKDFIYKGFDPLIERLKALSNVHVEG 274
+K F + GFDP+ ++ KALS ++ G
Sbjct: 147 RKAFSFFGFDPIDKQYKALSMIYPSG 172
>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLD) similar to Mg-chelatase SP|O24133 from
Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
sativum]
Length = 760
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 454 PQERGPQREHNEQLDQKRQDQRRHSEAESQKHGDIRPDQ---DVPSRVLREQLVVYL*RH 624
PQ E NE+ ++ ++ + E E+++ D P++ D ++ E+L+ + +
Sbjct: 418 PQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQA 477
Query: 625 PQKQGK 642
+++GK
Sbjct: 478 QKRRGK 483
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,588,169
Number of Sequences: 28952
Number of extensions: 233671
Number of successful extensions: 1037
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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