Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1061
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 27 1.3
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 27 2.3
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 4.0
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 5.3
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 7.0
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 25 7.0
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 7.0
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.2
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.2
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.2
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 232 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLL 357
N + RH SSS+ S + K STS+L SP S P L
Sbjct: 14 NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 262 SPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRSGGRFCEARLLL 411
S SS+ +L T+ +TS H + L+G+ GRFC A L+
Sbjct: 131 SEKSSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 229 INGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSP 348
+NG +HH +R +SS L++ GS +E + H P + P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 320 WVNSLVEPFVASDGFDEDGDRCLWCLK 240
W P VA D DEDG +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 57 LDSVSKYLQSASWRHFEKAARHEN 128
L +++ L + WR F KAAR+++
Sbjct: 163 LKEITESLHTLFWREFHKAARNQD 186
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 34 WISTMPRSSTLSVSIYS 84
WIST+P+S L+V Y+
Sbjct: 12 WISTIPKSGYLAVDCYA 28
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 146 WKLHTRSCRPNGKQSTSPKHLITDSPDPLTVLLGTT 253
W L R RP STSP+ + SP +T ++ +T
Sbjct: 293 WNLLRR--RPTNDASTSPRSTPSASPRSITKIIAST 326
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 382 GRFCEARLLLGSALATLRFMPRELIYTR 465
G C A LLG A ++ F P +Y R
Sbjct: 146 GDLCSATFLLGFAAGSVLFAPLSEVYGR 173
>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 116
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 194 TSTVYHSVYRIGYVVSSDHKKRVLMSCRL 108
TS VY GYV S DH K+ C+L
Sbjct: 7 TSRVYCKYTCCGYVGSLDHDKQDAHVCKL 35
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 9.2
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Frame = -1
Query: 201 FGDVDCLPFGLQDRVCSFQRPQEEGSHVVPPSR-----NGAMMPTVDTY*QSRAPGHRGD 37
FG + +P+ L SF + VPP+ N P+ Y A R +
Sbjct: 97 FGSSNFVPYNLLSNTPSFTTSHSSSTTFVPPATMGGGLNNLSSPSSSLYLPGSASYQRSN 156
Query: 36 PRASETMVLPM 4
+ S +L M
Sbjct: 157 SKNSSASILQM 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,081
Number of Sequences: 5004
Number of extensions: 42258
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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