Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1061
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 2.3
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 29 2.3
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 29 2.3
02_02_0537 + 11308195-11309667 29 2.3
01_05_0645 - 23899579-23904483 29 2.3
04_04_0933 + 29495656-29496972,29497244-29497819,29499414-294996... 29 3.1
01_01_0060 + 477667-477816,479312-479722 29 3.1
02_04_0149 + 20201674-20201891,20202009-20202111,20202658-202027... 28 5.3
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 27 7.1
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 27 7.1
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 27 7.1
12_01_1068 - 11052769-11052943,11053103-11053182,11053304-110534... 27 9.3
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 27 9.3
01_06_1050 + 34125087-34126001,34126082-34126639 27 9.3
01_01_0595 - 4430738-4430785,4430904-4432679 27 9.3
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 217 FSRSINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRSGGRFC 393
F +IN + H PSSS T T + H H P SF P + ++ ++ R C
Sbjct: 983 FHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 1040
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = -2
Query: 197 VTSTVYHSVYRIGYVVSSDHKKRVLMSCRLLEMAP*CRL*ILTDRVELRGIVEIHVPQKP 18
+++ ++S ++ S KKR M +L+ P +L + ++ ++ I H P+
Sbjct: 555 ISNDKFYSNRKMSQQARSHAKKRATMGLKLVHSVPAQKLQTMKPKLSIKEIANFHRPKAK 614
Query: 17 W 15
W
Sbjct: 615 W 615
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 287 SDGFDEDGDRCLWCLKAP 234
SDGFDE D C CL+ P
Sbjct: 282 SDGFDEGADACAVCLERP 299
>02_02_0537 + 11308195-11309667
Length = 490
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 217 FSRSINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRSGGRFC 393
F +IN + H PSSS T T + H H P SF P + ++ ++ R C
Sbjct: 141 FHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 198
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 217 FSRSINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRSGGRFC 393
F +IN + H PSSS T T + H H P SF P + ++ ++ R C
Sbjct: 1260 FHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 1317
>04_04_0933 +
29495656-29496972,29497244-29497819,29499414-29499650,
29499736-29500048,29500191-29500300
Length = 850
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +1
Query: 205 PHYGFSRSINGAFRHHKHRSPSSSNPSLATKGSTSELTHRH--SPVSFSPDLLSGSRFR 375
P R + A R P SNP A + ++ L HR P D+L+ SR R
Sbjct: 4 PPSSLLRDLLAADGFRNRRKPPDSNPPAAPRTTSMPLQHRRPSRPARSQSDVLTRSRLR 62
>01_01_0060 + 477667-477816,479312-479722
Length = 186
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 244 RHHKHRS-PSSSNPSLATKGSTSELTHRHSPVSFSPDL 354
RHH H S SSS+P +TK + ++L H ++ L
Sbjct: 32 RHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQL 69
>02_04_0149 +
20201674-20201891,20202009-20202111,20202658-20202765,
20202882-20202991,20203170-20203277,20203667-20203733,
20204044-20204078,20204456-20204501,20204692-20204844
Length = 315
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = -2
Query: 278 FDEDGDRCLWCLKAPLMDRENP**GALVTSTVYHSVYRIGYVVSSDHKKRVLMSC 114
F+ DG+ CL C K ++ NP GALV H SSD+ K L+SC
Sbjct: 29 FNRDGNYCLSCGKDRIIRLWNPHTGALVKPYKSHGREVRDVNSSSDNAK--LVSC 81
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 226 SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRSGG 384
S NG + R P SS +L +G L+ S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGG 249
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 262 SPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRSG 381
+P+ PS + ++ H H F P L+ FR+G
Sbjct: 95 TPTKGKPSSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAG 134
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 313 LTHRHSPVSFSPDLLS--GSRFRSGG-RFCEARLLLGSALATLRF 438
L+ H P SF+PD +S R ++GG EA+ GSA ++ F
Sbjct: 227 LSQVHPPCSFTPDEISYLTKRIQNGGTEVVEAKAGAGSATLSMAF 271
>12_01_1068 -
11052769-11052943,11053103-11053182,11053304-11053401,
11053487-11053627,11053701-11053841,11053933-11054017,
11055296-11055826,11055926-11055940
Length = 421
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 187 VDVTKAPHYGFSRSINGAFRHHKHRSPSSSNPSLATKGST 306
+D TK+ + RS NG HH SP+ ++ G T
Sbjct: 201 IDFTKSNEWTGKRSFNGMSLHHIGDSPNPYEQAITIIGQT 240
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 140 GRWKLHTRSCRPNGKQSTSPK 202
G+W++ +SC G ++TSPK
Sbjct: 848 GKWQVQCKSCLGMGHRATSPK 868
>01_06_1050 + 34125087-34126001,34126082-34126639
Length = 490
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 320 WVNSLVEPFVASDGFDEDGDRCLWCLKA 237
+V S++E F+ F+ DGD+ LW KA
Sbjct: 113 YVVSVMEDFLGHGIFNSDGDQWLWQRKA 140
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 141 PQEEGSHVVPPSRNGAMMPTVDTY*QSRAPGHRGDPRASETMVLP 7
P ++ + +PP R+ A+ P++ +RAP D A ++ LP
Sbjct: 197 PFKDLVNTLPPPRDAAVSPSIPAKKSARAPPSPKDTAAPVSVCLP 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,950
Number of Sequences: 37544
Number of extensions: 326213
Number of successful extensions: 945
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -