Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1061
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.8
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.1
SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 29 3.1
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 4.1
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) 28 4.1
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 28 4.1
SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_45043| Best HMM Match : Rho_N (HMM E-Value=0.0046) 28 5.5
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07) 28 5.5
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17) 27 7.2
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025) 27 7.2
SB_29434| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-25) 27 9.6
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 27 9.6
>SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 208 HYGFSRSINGAFR---HHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRS 378
H SR + A + H+ +P S+ + T + ELTH +SP S + L RFRS
Sbjct: 207 HKKISRDYSAAIKCIGRHRVPNPGESHEAEETSSESFELTHENSPRHISVEDLPKGRFRS 266
>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1814
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 123 HVVPPSRNGAMMPTVDTY*QSRAPGHRGDP 34
H++P + NGA + Y R P HR DP
Sbjct: 900 HIIPDAFNGAPCMRIAIYGDKRKPTHRVDP 929
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 105 EKAARHENPLLVVAGNYIPDPVDRMVNSRRHQSTSLRILPI 227
+K R E L+ + ++IP+PV RM+ +RH + + +L +
Sbjct: 195 DKIERREQTLIEML-DFIPEPVVRMMGGQRHHNGMVLLLEL 234
>SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 262 SPSSSNPSLATKGSTSELTHRHSPVSFSPDLLSGSRFRSGGRFCEARLLLGSALATL 432
SP+ S+P + +T E R S L+SG+ F S GRF A L GS+L +
Sbjct: 6 SPNESSPLMPYSSATIENLERPDVADDSSSLISGTVFAS-GRF--AWLARGSSLEVI 59
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 131 SSCGRWKLHTRSCRPNGKQSTSPKHLITDS 220
S+CGR +TR+CRP G +S + L D+
Sbjct: 655 STCGR-PSYTRTCRPEGAPGSSGQDLSADT 683
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 223 RSINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSP 333
R++ A H H PSS P+L+++ E+ HSP
Sbjct: 161 RNMMLAETRHTHAVPSSQAPALSSRHRKPEIKKSHSP 197
>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
Length = 602
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 190 DVTKAPHYGFSRSINGAFRHHKHRSP-SSSNPSLATKGSTSELT 318
DV+ AP+ +RS+ R H +R P S S+P+ K + S ++
Sbjct: 402 DVSDAPYSAHARSLPENRREHTNRQPISKSSPAKLQKTAPSSIS 445
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 131 SSCGRWKLHTRSCRPNGKQSTSPKHLI 211
++ G W+LH R N S +P HLI
Sbjct: 178 NTAGDWELHIDGVRRNNNTSLAPAHLI 204
>SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 498 IALRGYFSFTLTCVDELTGHKPECC*R*P*QEPCFAESTTGSETRPTEKIRRETH 334
I+ + +F+ L CV G +P+C R + C A S E+ + R ++H
Sbjct: 341 ISQQSFFANALGCVSGFIGGEPDCTLRMEASKVCVAISYLPQESCEIDHYRSDSH 395
>SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 409 LGSALATLRFMPRELIYTR*GEAEIASQGYQH 504
+G AT + P+E Y R + +I+ +GYQH
Sbjct: 537 IGKLNAT-QLPPKEAFYARLNDTDISEEGYQH 567
>SB_45043| Best HMM Match : Rho_N (HMM E-Value=0.0046)
Length = 589
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 409 LGSALATLRFMPRELIYTR*GEAEIASQGYQH 504
+G AT + P+E Y R + +I+ +GYQH
Sbjct: 556 IGKLNAT-QLPPKEAFYARLNDTDISEEGYQH 586
>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
Length = 493
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 262 SPSSSNPSLA-TKGSTSELTHRHSP 333
SP +N +LA TKG TSE RH P
Sbjct: 9 SPQGTNHNLARTKGQTSEGNRRHHP 33
>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 421 LATLRFMPRELIYTR*GEAEIASQGYQH 504
L T++ P+E Y+R + +I+ + YQH
Sbjct: 614 LDTVQLPPKEAFYSRLNDTDISEEDYQH 641
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 247 HHKHRSPSSSNPSLATKGSTSELTHRHSP-VSFSP 348
HH+H SPSS +PS + H H P +S SP
Sbjct: 605 HHRH-SPSSPSPSCIAIITVIHYRHNHHPALSSSP 638
>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
Length = 473
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 244 RHHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSP 348
RHH R P+ S P+ T + + HR P P
Sbjct: 356 RHHHRRHPAPSPPTTGTITADTRHHHRRHPAPSPP 390
>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 36 DLHDAPELDSVSKYLQSASWRHFEKAARHE 125
D +AP+L VS +LQS F+K + E
Sbjct: 372 DTDNAPDLSVVSSFLQSFGTEQFQKVTKPE 401
>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
Length = 1480
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 421 LATLRFMPRELIYTR*GEAEIASQGYQH 504
L +F P+E Y+R + +I+ + YQH
Sbjct: 655 LDATQFPPKEAFYSRLNDTDISEEDYQH 682
>SB_29434| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-25)
Length = 416
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 120 VVPPSRNGAMMPTVDTY*QSRAPGHRGD-PR 31
VV P +NG +P TY +S PG R PR
Sbjct: 16 VVSPYQNGTEIPFPQTYSRSHIPGSRAQIPR 46
>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.1 bits (57), Expect = 9.6
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +3
Query: 6 SXAPWFLRHVDLHDAPELDSV---SKYLQSASWRHFEKAARHENPL---LVVAGNYIPDP 167
S PW H D D LDS S+++ SA+ E HEN L GN++ P
Sbjct: 179 SSFPWRFPHTDSTDTSVLDSQAEDSRHVHSANLTTDE--TPHENSLNNGETTPGNHVTSP 236
Query: 168 VDRMVNSRRHQSTSLRILP 224
+ Q S+R P
Sbjct: 237 DQSVSCPTTPQEVSIRSCP 255
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 262 SPSSSNPSLA-TKGSTSELTHRHSP 333
SP +N +LA TKG TSE RH P
Sbjct: 374 SPQVTNHNLARTKGQTSEGNRRHHP 398
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,841
Number of Sequences: 59808
Number of extensions: 361465
Number of successful extensions: 1161
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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