Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1061
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-10|CAH19082.1|  268|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z46241-9|CAA86322.2|  270|Caenorhabditis elegans Hypothetical pr...    29   2.1  
X62782-1|CAA44619.1|  208|Caenorhabditis elegans pal-1 protein.        29   2.1  
AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z81555-1|CAB04516.1|  242|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL110500-15|CAD92406.1|  209|Caenorhabditis elegans Hypothetical...    27   8.3  

>Z46241-10|CAH19082.1|  268|Caenorhabditis elegans Hypothetical
           protein C38D4.6b protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 201 FGDVDCLPFGLQDRVCSFQRPQEEGSHVVPPSRNGA 94
           +G  D  PFGL     + Q P  E   V PP  NG+
Sbjct: 69  YGHPDLYPFGLPQLAANGQIPAVEAVDVKPPLSNGS 104


>Z46241-9|CAA86322.2|  270|Caenorhabditis elegans Hypothetical
           protein C38D4.6a protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 201 FGDVDCLPFGLQDRVCSFQRPQEEGSHVVPPSRNGA 94
           +G  D  PFGL     + Q P  E   V PP  NG+
Sbjct: 69  YGHPDLYPFGLPQLAANGQIPAVEAVDVKPPLSNGS 104


>X62782-1|CAA44619.1|  208|Caenorhabditis elegans pal-1 protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 201 FGDVDCLPFGLQDRVCSFQRPQEEGSHVVPPSRNGA 94
           +G  D  PFGL     + Q P  E   V PP  NG+
Sbjct: 7   YGHPDLYPFGLPQLAANGQIPAVEAVDVKPPLSNGS 42


>AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical
           protein F29A7.7 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 222 GESVMRCFGDVDCLPFGLQDRVCSFQRPQEEGSHVVPPSRNGAMM 88
           GE V +C+ + DC+   + D  C       EG+ +V   R G+++
Sbjct: 58  GECVQKCYENEDCILCYMNDGYCMIYHYSSEGA-IVALKRPGSVV 101


>Z81555-1|CAB04516.1|  242|Caenorhabditis elegans Hypothetical
           protein F58E10.5 protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 198 GDVDCLPFGLQDRVCSFQRPQEEGSHVVPPSRNGAMMPTVDT 73
           G+ +C P  L +RV   +RPQ   +      R   + P VD+
Sbjct: 196 GETECNPCNLYERVKGHKRPQHLWNKPAAKRRRRPVAPLVDS 237


>AL110500-15|CAD92406.1|  209|Caenorhabditis elegans Hypothetical
           protein Y87G2A.15 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 217 FSRSINGAFRHHKHRSPSSSNPSLATKGSTSE 312
           F + I  A R  KHR+P    P LA K   +E
Sbjct: 71  FPKLIEDASRQRKHRAPYVDEPVLAAKPKYAE 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,192
Number of Sequences: 27780
Number of extensions: 251928
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)