Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1061
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.48 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.63 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.8  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 428 HSGLCPVSSSTHVRV 472
           HS LCP   STH++V
Sbjct: 378 HSQLCPTPRSTHLKV 392


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 210 MRCFGDVDCLPFGLQDRVCSFQRPQE--EGSH 121
           +R   +VD LPFG+++ + S  +P    EGS+
Sbjct: 36  VRVAEEVDPLPFGVENTISSVPQPPRSLEGSY 67


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 393 AESTTGSETRPTEKIRR 343
           A  TTG+ T PT ++R+
Sbjct: 252 AAMTTGTTTIPTRRLRK 268


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 320 WVNSLVEPFV 291
           W+NS + PF+
Sbjct: 349 WINSAINPFI 358


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
 Frame = +1

Query: 247 HHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLS-----GSRFRSGGRFC 393
           +H +R P   N   A  G  S L      ++    LLS     G +  S G  C
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMC 77


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
 Frame = +1

Query: 247 HHKHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLS-----GSRFRSGGRFC 393
           +H +R P   N   A  G  S L      ++    LLS     G +  S G  C
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMC 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,664
Number of Sequences: 438
Number of extensions: 2920
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)