Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1061
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40316.1 68415.m04968 expressed protein                             29   2.6  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   4.5  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   4.5  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   4.5  
At3g58310.1 68416.m06500 receptor-like protein kinase-related co...    27   5.9  
At1g57780.1 68414.m06556 heavy-metal-associated domain-containin...    27   5.9  

>At2g40316.1 68415.m04968 expressed protein
          Length = 214

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 148 PATTRRGFSCRAAFSKWRHDADCRYLLTESSSGASWRSTCL 26
           P T  +  +C+ A ++ RH A C   ++  SSG  W ST L
Sbjct: 105 PLTLAKSGTCQYA-TQLRHPAGCAAAISGHSSGWGWFSTLL 144


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 KHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLS 360
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 KHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLS 360
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 KHRSPSSSNPSLATKGSTSELTHRHSPVSFSPDLLS 360
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g58310.1 68416.m06500 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; belongs to a family which includes
           receptor-like kinase family proteins
          Length = 258

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 483 YFSFTLTCVDELTGHKPECC 424
           +F+   TC+D++ G  P+CC
Sbjct: 212 WFTVCKTCLDKIIGELPKCC 231


>At1g57780.1 68414.m06556 heavy-metal-associated domain-containing
           protein low similarity to myosin-like antigen GI:159877
           Onchocerca volvulus; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 264

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 123 ENPLLVVAGNYIPDPVDRMVNSRRHQ 200
           EN  +VV GN+  D + R +N + HQ
Sbjct: 169 ENKKVVVIGNFDKDELSRKLNKKMHQ 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,494,994
Number of Sequences: 28952
Number of extensions: 242125
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)