Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1060
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.59 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.59 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.59 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.59 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   3.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   4.2  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   7.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   9.7  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   9.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 288 PDHLTAPPTDPKFPP 244
           P H++    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 288 PDHLTAPPTDPKFPP 244
           P H++    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 288 PDHLTAPPTDPKFPP 244
           P H++    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 288 PDHLTAPPTDPKFPP 244
           P H++    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 535 PPTTLSKEIYTIXRRNRPGSLLTP 606
           P T L   IYT  +R R    L+P
Sbjct: 458 PSTELGTNIYTSSKRQRTSPQLSP 481


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 232 FLTLRWELWISWWGCQMIWASLILSS 309
           FLT R +LW+SW     ++  L+L +
Sbjct: 377 FLT-RGDLWLSWEEGMKVFEELLLDA 401


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 494 FAYDVGDIPQTLLYGVLSHVPLEASQISG*VT 399
           FA  +G   Q  +Y V+ H P ++  +SG +T
Sbjct: 8   FAMTLGQ--QNKMYNVIQHSPQQSIIVSGSIT 37


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 207 LSVNYKFPIPDLKVGTLD 260
           L +NYK   PDLK   LD
Sbjct: 128 LEINYKLIDPDLKELNLD 145


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 176 YPEQCHQIRQPQCQ 217
           YP +C  I +P CQ
Sbjct: 29  YPPRCPPIYEPSCQ 42


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 590 GAY*PRNLADLVKKEHFILDSEYPDPHSW 676
           GAY P   A + KK+    + E    H W
Sbjct: 201 GAYGPEKSASIPKKKEVKEEIEDEPDHKW 229


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2

Query: 438 CPIGSESNKWVGHCYWP 388
           CP G   N   G C WP
Sbjct: 138 CPNGLVYNDKAGICSWP 154


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +3

Query: 249 GTLDQLVGLSDDLGKLDT---FVEGVTRKVAQYLG 344
           GT  QL+ L  D GKL     F E  +R++    G
Sbjct: 104 GTTSQLIELLGDAGKLLASVHFAESQSRRILASAG 138


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 205 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 107
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 205 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 107
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 205 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 107
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 205 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 107
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 211 VSTINSLFLTLRWELW 258
           +S +NSL LTL+ + W
Sbjct: 147 LSNVNSLTLTLKRKKW 162


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 211 VSTINSLFLTLRWELW 258
           +S +NSL LTL+ + W
Sbjct: 73  LSNVNSLTLTLKRKKW 88


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 623  VKKEHFILDSEYPDP 667
            + K HF+ D   PDP
Sbjct: 1073 LSKMHFVKDGVIPDP 1087


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,465
Number of Sequences: 336
Number of extensions: 3505
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)