Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1060
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 32 0.51
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 30 1.6
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 29 3.6
SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 28 6.3
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 28 8.4
>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 103 bits (247), Expect = 1e-22
Identities = 65/157 (41%), Positives = 89/157 (56%)
Frame = +3
Query: 117 MTEYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKL 296
M EYW++SAPG+KT QQT++ L + + +S YKFPIP+LKVGTLD LVGLSDDL K+
Sbjct: 1 MAEYWLVSAPGEKTQQQTYEALKS--RMVGMSPVYKFPIPELKVGTLDTLVGLSDDLNKV 58
Query: 297 DTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNI 476
D+FVE L + + N +++ TY + + + P S
Sbjct: 59 DSFVESSVD---------LSNHAAQNDYNEHFDHNGFETYHSEDEDEDGSEPPSSS---- 105
Query: 477 ADIISKQVGQIDADLKVKXSAYNALKGNLHNLXKKQT 587
I QV QI+ DLK K +AYN +KG L +L +K T
Sbjct: 106 ---ILTQVSQIEHDLKTKSAAYNNIKGTLASLERKST 139
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 31.9 bits (69), Expect = 0.51
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +3
Query: 165 QTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLG 344
Q + NA K N +V + I DLK T+ QL D + LD V V K
Sbjct: 527 QLSEAQRNAEKFKNDNVRKQKTIDDLK-NTIAQL---EDKINALDNDVREVNTK-----N 577
Query: 345 EVLEDQRDKLHENLMANN 398
++LEDQ ++H++L+ N
Sbjct: 578 DILEDQAKEMHDDLLEAN 595
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -2
Query: 375 GAYRADLQVPLQGTGLPSWSHLRRKYQACPDHLTAPPTD--PKFPP*G 238
G Y VP +G G+P +H Y A P APP P PP G
Sbjct: 202 GGYAPPPYVPQEGGGIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAG 249
>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/120 (22%), Positives = 58/120 (48%)
Frame = +3
Query: 135 ISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEG 314
++AP +K+C +D++ +A G ++ Y+ P+L++ +L + + L + +
Sbjct: 453 LAAPLEKSCTDLYDSIVSAALVGRVTTLYR-TRPELEIVSLFCSI-IDRCLATAEQVLAA 510
Query: 315 VTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIADIISK 494
V ++ AQ++ + +LH AN L +L F D K + +++AD+ K
Sbjct: 511 VNQRHAQWINK-------ELHSRQRANYKRLRAHLP-FIRDTLKLTVGVVAQHLADLTLK 562
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 167 LLTGLVARGTDHPVFSHFHHKNLKINAVYNKLSETANNFGETTRQFGTSPSTP 9
++TGL D PV + F+H V LS + + TT S STP
Sbjct: 167 VITGLSGHDNDKPVITEFNHGMTPGKHVITGLSGQSVSLSATTDDVNLSISTP 219
>SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 138 SAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 272
SA + +W T ++T S + SV + IP L QL+G
Sbjct: 219 SASASSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTIILTQLIG 263
>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 398 Q*PTHLFDSLPMGHG*VP-HKAESAEYRRHHKQTGRTDRRGSEGQ 529
Q P +SLP+G G +P K+ A + QTG TD+ GS GQ
Sbjct: 501 QQPKEEKESLPVG-GIIPIPKSALATRDKAGSQTGSTDQTGSHGQ 544
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 663 SGYSLSKMKCSFXTRSAKLRG 601
SG+ LS KC F TRS K G
Sbjct: 718 SGFKLSGKKCQFATRSVKFLG 738
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 407 THLFDSLPMGHG*VPHKAES--AEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKSTQFXEE 580
TH ++ P H VPH ES A + R++ + D G E ++ + S+Q +
Sbjct: 695 THFKEARPRHHFTVPHITESHKAYFHRYYIELTCNDALGMENGAIKASKISATSSQTGAQ 754
Query: 581 TDPG 592
G
Sbjct: 755 PSQG 758
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,684,940
Number of Sequences: 59808
Number of extensions: 432684
Number of successful extensions: 1304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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