Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1060
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h at... 190 6e-49
AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein... 190 6e-49
AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h at... 117 7e-27
Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 28 5.6
AL117195-7|CAB55028.1| 158|Caenorhabditis elegans Hypothetical ... 28 5.6
Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50756-3|CAI79214.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 27 9.8
>AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoforma protein.
Length = 384
Score = 190 bits (464), Expect = 6e-49
Identities = 90/159 (56%), Positives = 113/159 (71%)
Frame = +3
Query: 123 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 302
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 303 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 482
E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 483 IISKQVGQIDADLKVKXSAYNALKGNLHNLXKKQTRELI 599
II KQ+ QID DLKVK YN LK L ++ +K L+
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLL 164
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 590 GAY*PRNLADLVKKEHFILDSEY 658
G+ ++LADLVK + F+L+SEY
Sbjct: 161 GSLLTKDLADLVKADDFVLNSEY 183
>AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein
protein.
Length = 384
Score = 190 bits (464), Expect = 6e-49
Identities = 90/159 (56%), Positives = 113/159 (71%)
Frame = +3
Query: 123 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 302
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 303 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 482
E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 483 IISKQVGQIDADLKVKXSAYNALKGNLHNLXKKQTRELI 599
II KQ+ QID DLKVK YN LK L ++ +K L+
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLL 164
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 590 GAY*PRNLADLVKKEHFILDSEY 658
G+ ++LADLVK + F+L+SEY
Sbjct: 161 GSLLTKDLADLVKADDFVLNSEY 183
>AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoformb protein.
Length = 133
Score = 117 bits (282), Expect = 7e-27
Identities = 56/92 (60%), Positives = 65/92 (70%)
Frame = +3
Query: 123 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 302
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 303 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANN 398
E V RK+ QY EVLE+ + K+ ENL+ N
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGN 97
>Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical
protein K09A9.1 protein.
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 155 LVARGTDHPVFSHFHHKNLKINAVYNKLSETANNFGETTRQFGTSPST 12
L+ G +P+ H+H ++ V KL AN+ T GT P +
Sbjct: 579 LLLPGDIYPISEHYHPSQQPVDKVVYKLLSDANSLAFPTVMKGTVPKS 626
>Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical
protein R08H2.8 protein.
Length = 367
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 246 VGTLDQLVGLSDDLGKLDTFVEGVTR 323
VG D + GL GKL+ F+ GVT+
Sbjct: 161 VGQYDYITGLEGSSGKLNVFMGGVTK 186
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 414 YLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKXSAYNALKG 557
YL + A++ Q L+ I D + KQV Q D K +A LKG
Sbjct: 251 YLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKG 298
>AL117195-7|CAB55028.1| 158|Caenorhabditis elegans Hypothetical
protein Y57A10A.9 protein.
Length = 158
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 86 VYNKLSETANNFGETTRQFGTSPST 12
++ L + A NF +TT+Q TSPS+
Sbjct: 119 IFADLQKEAENFSKTTKQSSTSPSS 143
>Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical
protein T07G12.5 protein.
Length = 555
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +3
Query: 294 LDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPT----YLTRFQWDMAKYPIKQ 461
LD G TR+ ++ E+ ED + + N LP+ + R+ W + P+
Sbjct: 467 LDNITGGATRRQRGFVSEIDEDDDVEEQATVEMNGYALPSKLNQFFLRYSW-LTYLPVIP 525
Query: 462 SLRNIADIISK 494
S R I +I K
Sbjct: 526 SEREIREIEEK 536
>Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical
protein M162.7 protein.
Length = 690
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +3
Query: 231 IPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLP 410
+ D+ + + +L+GL D K DTF+ +T + ++ ++ + N S L
Sbjct: 101 LKDISMESSKELIGLGSDAFKYDTFIHNLTSVRDSFKFPGKDEYYAEVESVMKFNMSKLE 160
Query: 411 TYLTRFQ 431
+ FQ
Sbjct: 161 DVMNEFQ 167
>Z50756-3|CAI79214.1| 305|Caenorhabditis elegans Hypothetical
protein T08D10.4 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 167 LLTGLVARGTDHPVFSHFHHKNLKINAVYNK-LSETANNFGETTR 36
+LT + + + V HFH K+LKI + NK + E N+ T+
Sbjct: 93 VLTSISSDLASNNVTEHFHDKSLKIEQMKNKTIRENDNSHNNQTQ 137
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +3
Query: 345 EVLEDQRDKLH--ENLMANNSDL-PT---YLTRFQWDMAKYPIKQSLRNIADIISKQVGQ 506
++LED ++ H ENL+AN + PT + QWD+++ + D++ KQ+G
Sbjct: 3394 QLLEDVENQKHNLENLLANLPENDPTADELRQKSQWDLSR---------LKDLL-KQLGS 3443
Query: 507 IDADLKVKXSAYNALKGNLHNLXKKQTRE 593
D +A+NA + N + TRE
Sbjct: 3444 AVGDKLAALAAFNAARKNAEDALLDITRE 3472
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +3
Query: 345 EVLEDQRDKLH--ENLMANNSDL-PT---YLTRFQWDMAKYPIKQSLRNIADIISKQVGQ 506
++LED ++ H ENL+AN + PT + QWD+++ + D++ KQ+G
Sbjct: 4297 QLLEDVENQKHNLENLLANLPENDPTADELRQKSQWDLSR---------LKDLL-KQLGS 4346
Query: 507 IDADLKVKXSAYNALKGNLHNLXKKQTRE 593
D +A+NA + N + TRE
Sbjct: 4347 AVGDKLAALAAFNAARKNAEDALLDITRE 4375
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +3
Query: 345 EVLEDQRDKLH--ENLMANNSDL-PT---YLTRFQWDMAKYPIKQSLRNIADIISKQVGQ 506
++LED ++ H ENL+AN + PT + QWD+++ + D++ KQ+G
Sbjct: 5251 QLLEDVENQKHNLENLLANLPENDPTADELRQKSQWDLSR---------LKDLL-KQLGS 5300
Query: 507 IDADLKVKXSAYNALKGNLHNLXKKQTRE 593
D +A+NA + N + TRE
Sbjct: 5301 AVGDKLAALAAFNAARKNAEDALLDITRE 5329
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +3
Query: 345 EVLEDQRDKLH--ENLMANNSDL-PT---YLTRFQWDMAKYPIKQSLRNIADIISKQVGQ 506
++LED ++ H ENL+AN + PT + QWD+++ + D++ KQ+G
Sbjct: 6154 QLLEDVENQKHNLENLLANLPENDPTADELRQKSQWDLSR---------LKDLL-KQLGS 6203
Query: 507 IDADLKVKXSAYNALKGNLHNLXKKQTRE 593
D +A+NA + N + TRE
Sbjct: 6204 AVGDKLAALAAFNAARKNAEDALLDITRE 6232
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +3
Query: 345 EVLEDQRDKLH--ENLMANNSDL-PT---YLTRFQWDMAKYPIKQSLRNIADIISKQVGQ 506
++LED ++ H ENL+AN + PT + QWD+++ + D++ KQ+G
Sbjct: 7057 QLLEDVENQKHNLENLLANLPENDPTADELRQKSQWDLSR---------LKDLL-KQLGS 7106
Query: 507 IDADLKVKXSAYNALKGNLHNLXKKQTRE 593
D +A+NA + N + TRE
Sbjct: 7107 AVGDKLAALAAFNAARKNAEDALLDITRE 7135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,299
Number of Sequences: 27780
Number of extensions: 325873
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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