Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1059
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 51 8e-07
04_03_0649 - 18402976-18403220,18403305-18404499 45 5e-05
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 34 0.100
10_08_0009 + 14075929-14076789 33 0.17
03_01_0436 + 3384526-3385236,3387857-3388720 28 5.0
12_02_0445 - 19153580-19154269 27 8.7
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488... 27 8.7
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 27 8.7
01_06_0673 + 31089846-31090132,31090258-31090453 27 8.7
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +3
Query: 312 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 479
+S+K+ G V +LS+G D E+ ++ + + R AFINS + LA GFDG
Sbjct: 98 SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157
Query: 480 IDLAWQFP 503
+DLAW+FP
Sbjct: 158 LDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 44.8 bits (101), Expect = 5e-05
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Frame = +3
Query: 141 YVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSL 320
Y + A + PL A S THL Y + P L+ + D RA+
Sbjct: 45 YYLAADAHLRPLAALDA-SMYTHLYYYAVAVHPARRTLLLPPDPAAASLLGDFSRAV--- 100
Query: 321 KAKYPGLTVLLSVGGD---------ADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGF 473
KAK + +LS+G A + + + +R AFI + V +A + GF
Sbjct: 101 KAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGF 160
Query: 474 DGIDLAWQFP 503
DG+D+AW+FP
Sbjct: 161 DGLDVAWRFP 170
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 33.9 bits (74), Expect = 0.100
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 171 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT 314
PL+LDP H+L Y + TY LV + +D HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725
>10_08_0009 + 14075929-14076789
Length = 286
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 306 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL----LAEQYGF 473
A+ + KA +P L+V+L++GGD T + N + A++ + L + YG
Sbjct: 70 AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127
Query: 474 DGIDLAWQ 497
DG+D+ ++
Sbjct: 128 DGVDVDYE 135
>03_01_0436 + 3384526-3385236,3387857-3388720
Length = 524
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 189 ALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYR--AITSLKAKYPGLTVLLS 356
A+ HLL +A +TY LV EN+ ++ NYR +T+ + G VLLS
Sbjct: 228 AIDLAKHLLQVHA----ETYALVVSTENITLNAYMGNYRPMLVTNTLFRMGGAAVLLS 281
>12_02_0445 - 19153580-19154269
Length = 229
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 224 IAVQQVGAERQSGIEVQRQHAG 159
+ V+++ A R+ G+EVQR HAG
Sbjct: 107 VEVRELLARRRLGVEVQRVHAG 128
>11_06_0296 +
22046649-22048202,22048524-22048703,22048811-22048860,
22049443-22049564,22051007-22051119,22051227-22051436,
22052152-22052265,22052529-22052658,22053010-22053143,
22053997-22054077,22054181-22054267
Length = 924
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 394 ITFCWNRSKPVLLSLIPECCWLNNMVSMELTSPGSSQELSLRRS--ARPGDRFWHGIKKT 567
ITF + K + LI ++++ LT+ G+ +L R+ R G GIKK
Sbjct: 449 ITFGQDSEKHDIFRLIKINDMFDSLI--RLTAGGTEPDLVEMRTEKCREGAEILEGIKKR 506
Query: 568 FGTTPXDEXES 600
GT P D S
Sbjct: 507 LGTLPTDTSSS 517
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 98 GNPQQSTLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAVRLCR 229
GN Q + L Q CQR+ S A G HP+ RL R
Sbjct: 105 GNLQLAWELSSQIRNCQRLLSEEAVSGKAITKEEAHPIITRLAR 148
>01_06_0673 + 31089846-31090132,31090258-31090453
Length = 160
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 306 HGSCRVFGLCPGSRLRTPAYRCQAGYRHSRTASGC 202
HG+ R+ GL P + + R RT+SGC
Sbjct: 58 HGTTRIHGLGPSRDVELLHWPISQALRERRTSSGC 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,240
Number of Sequences: 37544
Number of extensions: 337059
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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