Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1058
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 5.6
02_02_0283 + 8542344-8542604 28 5.6
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 28 7.4
06_03_0594 - 22600269-22600390,22600771-22600887,22600996-22601101 28 7.4
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 28 7.4
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 28 7.4
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 9.8
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 27 9.8
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 517 LPKLAHLAPSSDLRLHRSSKPEFSPI 440
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>02_02_0283 + 8542344-8542604
Length = 86
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = -1
Query: 629 HGHRPCCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKIGPLGTVIRS 480
HGH CC R TPF + H L L+L L P A +L P S
Sbjct: 6 HGHGGCCRNR-TPFRL-HCASL-PLSLSLTAPAAELLTVATSPAAVAASS 52
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 256 KSIVGTGYRGERLIEPSSSWFRPKFPSG 339
+ + GTG + PSS+WF P+ SG
Sbjct: 12 RCVFGTGPLPPASLSPSSAWFDPELSSG 39
>06_03_0594 - 22600269-22600390,22600771-22600887,22600996-22601101
Length = 114
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 617 PCCHERPTPFMVSHERFLGALTLR-LVHPTAPVLLTKIGPLG 495
P C + TP +V H LT+R +V P +P +K P+G
Sbjct: 35 PACQLKLTPVLVEHPGLSIELTIRAVVRPISPNCESKPPPVG 76
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 183 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 293
DG+ +V + SGE D+S ++Q+D+ ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 437 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 276
K E LRSF + LP K+ I A++ GN+ GRN GS L L+
Sbjct: 93 KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 614 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 507
C E PF HE ALTL + PTA L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 433 NFKWVRTPAYSNDEAGDLMTVPSGPILVSRTGA 531
+F W P + N++AG + PS P+ S +G+
Sbjct: 282 SFAWAMIPLFENNQAGGAAS-PSSPLAPSMSGS 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,718,173
Number of Sequences: 37544
Number of extensions: 420573
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -