Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1058
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2) 45 6e-05
SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1) 32 0.35
SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041) 30 1.4
>SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/42 (59%), Positives = 29/42 (69%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGFIVRVSRSSHPFKV 433
LN FGSS ASSAYQ WPT + H +SGF SR+S+ FKV
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGFNY-ASRTSYQFKV 57
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -3
Query: 246 NRYGPPSGFPLTST*PGIVHHLSGPSICA 160
NRY PP FPL S GIVHHLSGP+ CA
Sbjct: 1 NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29
>SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 57 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 85
>SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 54 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 82
>SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 55 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 83
>SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 55 LNRAFGSSRIASSAYQKWPTSNSHSLSGF 83
>SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTKNSHSLSGF 45
>SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2)
Length = 125
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 96 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 124
>SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 139 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 167
>SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNHAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN +GSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAYGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -2
Query: 247 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 158
ESLR+S RVS F L RHSSPSFGSQ + S
Sbjct: 35 ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64
>SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSA Q WPT + H +SGF
Sbjct: 74 LNRAFGSSRIASSALQKWPTRNSHSLSGF 102
>SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQISGF 472
LN FGSS ASSAYQ PT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKGPTRNSHSLSGF 45
>SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPTWHRHQI 481
LN FGSS ASSAYQ WPT + H +
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSL 42
>SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWPT 499
LN FGSS ASSAYQ WPT
Sbjct: 17 LNRAFGSSRIASSAYQKWPT 36
>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -3
Query: 246 NRYGPPSGFPLTST*PGIVHH 184
NRY PP FPL S GIVHH
Sbjct: 1 NRYEPPPEFPLASPYSGIVHH 21
>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1
Query: 296 ISLSPLYPVPTIDLHVR 246
ISLSPLYP TIDLHVR
Sbjct: 38 ISLSPLYPNLTIDLHVR 54
>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
Length = 276
Score = 32.3 bits (70), Expect = 0.35
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = -1
Query: 605 ERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI-------GPLGTVIRSPASSFE*AGVL 447
E+PTPF+ S ER RL HP ++I GP T I P + + G+L
Sbjct: 58 EQPTPFVGSDER-------RLWHPYRAFGSSRIASSGYQNGPTRTRIHCPGFNKQ-VGLL 109
Query: 446 THLKFENR 423
T+LKFENR
Sbjct: 110 TNLKFENR 117
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = -3
Query: 546 FGSSHSASSAYQNWPTWHRHQISGF 472
FGSS ASS YQN PT R GF
Sbjct: 78 FGSSRIASSGYQNGPTRTRIHCPGF 102
>SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3
Query: 558 LNTTFGSSHSASSAYQNWP 502
LN FGSS ASSAYQN P
Sbjct: 17 LNRAFGSSRIASSAYQNGP 35
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 602 RPTPFMVSHERFLGALTLRLVHPTAPVLLTKIGPLGTVIRSPAS 471
+PTPF+ S ER L L + GPLGT I PAS
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQNGPLGTRIHCPAS 45
>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
Length = 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +3
Query: 114 LPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDRSDSDVQID 263
L RR VSN + +++H+ + +DG+ V++K G++L++ D+DV ++
Sbjct: 29 LARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDNDVDLE 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,839,651
Number of Sequences: 59808
Number of extensions: 459609
Number of successful extensions: 1033
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -