Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1057
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   1.8  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   4.1  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   5.4  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    24   9.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    24   9.4  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    24   9.4  

>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 318 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 163
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 178 VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 285
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 288 HPTYSH*QTLVPFWERQH 235
           HP Y + ++  PFWE  H
Sbjct: 197 HPAYENDRSWRPFWENYH 214


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 168 LEAGPSGSAKDEFVTIPDEDENNAVAPKMEPE 263
           L   P+ S+  EFV I     ++AV P  EP+
Sbjct: 572 LSMQPAISSSSEFVPIESHPSSSAVVPIEEPK 603


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 186 GSAKDEFVTIPDEDENNAVAPKMEPEFVNE 275
           G+  D+ +   D +EN+ + P +EP  + +
Sbjct: 629 GTVPDDSIFAMDNEENSELPPPLEPAEIGD 658


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 151  RFAGPLCEEEELFDAIDGL 95
            RF   LC EE L DAI  L
Sbjct: 1742 RFVNALCNEESLTDAICNL 1760


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 183 SGSAKDEFVTIPDEDENN 236
           SGS  DEF    DEDE N
Sbjct: 190 SGSFDDEFSAPSDEDEGN 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,138
Number of Sequences: 5004
Number of extensions: 27023
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)