Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1057
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493... 29 1.7
03_05_1157 + 30816143-30816359,30817005-30817120 28 3.0
11_01_0475 - 3669734-3671452 28 4.0
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 28 4.0
11_06_0730 - 26728241-26729335,26729998-26730660 27 7.0
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 27 7.0
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951 27 7.0
04_04_0972 - 29804792-29805709 27 9.2
01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022 27 9.2
>04_03_0520 -
16748646-16748741,16748821-16748895,16749260-16749362,
16749635-16749783,16750986-16751110,16751320-16751389
Length = 205
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 217 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 315
Q K+ + LP + SL + G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202
>03_05_1157 + 30816143-30816359,30817005-30817120
Length = 110
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 293 IVIPHTLINKLWFHFGSDSIVLIFVW 216
++IPH +NK FH S +++LIF+W
Sbjct: 85 LIIPHDTLNKGKFHKRS-NLLLIFLW 109
>11_01_0475 - 3669734-3671452
Length = 572
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 172 SSGSTHFRFAGPLCEEEELFDAID 101
SSG+ HFR +G + +E+F A++
Sbjct: 486 SSGAKHFRVSGSVASPDEIFAALE 509
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 305 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 213
R + +P TL+++LW HF + +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 190 EPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLESRSVSNLVITDCXC 11
EP+G +S H A C+ + I L L A G+ L SRS + L I+ C
Sbjct: 106 EPQGSSSKWHPHIDDAIHACKTSWIGRCITTL--LEWAQGLYRSLRSRSAALLPISCSRC 163
Query: 10 C 8
C
Sbjct: 164 C 164
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.1 bits (57), Expect = 7.0
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Frame = -3
Query: 229 SSSSGIVTNSSFAEPEGPASSGSTHFR--FAGPLCEEEEL-----FDAIDGLFGL-LTAT 74
S S +VT+ S +P P SSG H R F G + + FD L G +TA
Sbjct: 1069 SLSQSVVTSESILQPGLPLSSGMDHARRNFVGSISDTASQQVGSNFDDGKSLTGNDVTAN 1128
Query: 73 GVE-EGLESRSVSNLVITD 20
E G+++ + +N V+ +
Sbjct: 1129 ETEYHGIKAAATNNYVVDE 1147
>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
Length = 563
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 201 EFVTIPDEDENNAVAPKMEPEFVNE 275
+F+ PD+D+N +A K+E ++ +E
Sbjct: 293 KFIRQPDDDDNGKMAAKLEKQYNSE 317
>04_04_0972 - 29804792-29805709
Length = 305
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 226 SSSGIVTNSSFAEPEGPASS-GSTHFRF 146
S SG+VTN + +P PA + S H RF
Sbjct: 141 SGSGVVTNVTLRQPSAPAGAVVSLHGRF 168
>01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022
Length = 342
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 347 HIRIVLSXISFVIVRAIFIVIPHTLINKLWFHFGSDSI 234
H+ I+ S I V+V+ F IP I K W DSI
Sbjct: 75 HLGIICSHIIIVMVQYGFTEIPKKCILKRWTKDARDSI 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,086,143
Number of Sequences: 37544
Number of extensions: 182872
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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