Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1057
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 31 0.58
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3) 29 2.3
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 28 3.1
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 28 4.1
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 4.1
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 4.1
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 4.1
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 4.1
SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 28 4.1
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 28 4.1
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 28 4.1
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 28 4.1
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0) 27 7.2
SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = -2
Query: 365 IKTSHFHIRIVLSXISFVIVRAIFIVIP--HTLINKLWFHFGS-DSIVLIFVWYRHKFV- 198
+ S F + +++ + V+V + + T +N L + + D + L+FV ++ F+
Sbjct: 598 VLASVFAVLVLIGVVGNVLVCLVILRFSSMRTPMNYLLLNLAAADLLTLLFVSPQYVFIH 657
Query: 197 -FCRTRGTCFQWIYAFSFR 144
F G CF + +AF+FR
Sbjct: 658 TFVHPIGECFSFFFAFAFR 676
>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 163 IHWKQVPLVLQKTNL*RYQTK 225
+H++ +P V+QKTNL RY K
Sbjct: 24 VHFRSMPRVVQKTNLTRYNLK 44
>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
Length = 345
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 323 ISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTRG--TCFQWIY 159
+S + I I +T NKL H +D VL ++ K CR +G T FQ +Y
Sbjct: 180 VSKCVTSYISEFIGNTSTNKLDVHCTADKAVLSYIVMDRKLNVCRWQGYWTLFQLLY 236
>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 353 HFHIRIVLSXISFVIVRAIFIVIPHTLINKL 261
HF R VL + FV V +I IV+P+ L+ +L
Sbjct: 130 HFGPRTVLGVVVFVWVLSIAIVLPYMLVLRL 160
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 103 Q*HQITLLPHKVDQRNENA*IHWKQVPLVLQKTNL*RYQTKMR 231
Q H+I+L HK R + + PL KT L +Y+T +R
Sbjct: 103 QQHKISLQQHKTRLRQHKTPLRQHKTPLRQHKTPLRQYKTPLR 145
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 745 ARHKAADAISRHPTGSTTPEMMTLPDD 771
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 234 ARHKAADAISRHPTGSTTPEMMTLPDD 260
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 679 ARHKAADAISRHPTGSTTPEMMTLPDD 705
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 172 ARHKAADAISRHPTGSTTPEMMTLPDD 198
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDD 119
>SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 51 ARHKAADAISRHPTGSTTPEMMTLPDD 77
>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 209 ARHKAADAISRHPTGSTTPEMMTLPDD 235
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 272 ARHKAADAISRHPTGSTTPEMMTLPDD 298
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDD 119
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 286 ARHKAADAISRHPTGSTTPEMMTLPDD 312
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P+GS E +T+PD+
Sbjct: 999 ARHKAADAISRHPTGSTTPEMMTLPDD 1025
>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1308
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 323 ISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 213
I+ +I+ AI +I N LWF GS + ++WY
Sbjct: 851 ITVLIIDAIIALIIPAFAN-LWFALGSLPPLFFYIWY 886
>SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 144 AKRKCVDPLEAGPSGSAKDEFVTIPDE 224
A+ K D + P GS E +T+PD+
Sbjct: 172 ARHKAADAISRHPMGSTTPEMMTLPDD 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,447,675
Number of Sequences: 59808
Number of extensions: 202984
Number of successful extensions: 598
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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