BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1057 (450 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein. 33 0.60 U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein. 33 0.60 BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein. 33 0.60 BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein. 33 0.60 AY714037-4|AAU02920.1| 227|Homo sapiens cytochrome c oxidase su... 31 2.4 AK091467-1|BAC03669.1| 619|Homo sapiens protein ( Homo sapiens ... 30 4.2 AK055949-1|BAB71053.1| 352|Homo sapiens protein ( Homo sapiens ... 30 4.2 AB067504-1|BAB67810.2| 702|Homo sapiens KIAA1917 protein protein. 30 4.2 Y14318-1|CAA74699.1| 606|Homo sapiens peroxisomal ABC-transport... 29 5.5 CR457104-1|CAG33385.1| 606|Homo sapiens ABCD4 protein. 29 5.5 BT007412-1|AAP36080.1| 606|Homo sapiens ATP-binding cassette, s... 29 5.5 BC012815-1|AAH12815.1| 606|Homo sapiens ATP-binding cassette, s... 29 5.5 AF009746-1|AAB83967.1| 606|Homo sapiens peroxisomal membrane pr... 29 5.5 AP008747-4|BAE13699.1| 227|Homo sapiens cytochrome oxydase subu... 29 7.3 U12693-1|AAA20846.1| 227|Homo sapiens cytochrome oxidase subuni... 29 9.7 EF657504-4|ABR96516.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 EF093554-4|ABL61830.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ282474-4|ABB79225.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ282473-4|ABB79212.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ282472-4|ABB79199.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ246818-4|ABB45497.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ112914-4|AAZ02753.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ112902-4|AAZ02597.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ112879-4|AAZ02298.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ112794-4|AAZ01193.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 DQ112789-4|AAZ01128.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 AY714004-4|AAU02491.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 AP008678-4|BAE12802.1| 227|Homo sapiens cytochrome oxydase subu... 29 9.7 AP008623-4|BAE12087.1| 227|Homo sapiens cytochrome oxydase subu... 29 9.7 AP008495-4|BAE10421.1| 227|Homo sapiens cytochrome oxydase subu... 29 9.7 AP008370-4|BAE08796.1| 227|Homo sapiens cytochrome oxydase subu... 29 9.7 AF347013-4|AAK17860.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 AF347012-4|AAK17847.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 AF347008-4|AAK17795.1| 227|Homo sapiens cytochrome c oxidase su... 29 9.7 >Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein. Length = 1142 Score = 32.7 bits (71), Expect = 0.60 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = -3 Query: 223 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 53 SS + S A P P S + FR GP CE +F ++D GL A ++ LE Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092 >U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein. Length = 1142 Score = 32.7 bits (71), Expect = 0.60 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = -3 Query: 223 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 53 SS + S A P P S + FR GP CE +F ++D GL A ++ LE Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092 >BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein. Length = 1142 Score = 32.7 bits (71), Expect = 0.60 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = -3 Query: 223 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 53 SS + S A P P S + FR GP CE +F ++D GL A ++ LE Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092 >BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein. Length = 1142 Score = 32.7 bits (71), Expect = 0.60 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = -3 Query: 223 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 53 SS + S A P P S + FR GP CE +F ++D GL A ++ LE Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092 >AY714037-4|AAU02920.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 30.7 bits (66), Expect = 2.4 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++S I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIISLICFLVLYALFLTLTTKLTN 52 >AK091467-1|BAC03669.1| 619|Homo sapiens protein ( Homo sapiens cDNA FLJ34148 fis, clone FCBBF3012546. ). Length = 619 Score = 29.9 bits (64), Expect = 4.2 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = -3 Query: 229 SSSSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLES 50 SS +G +S+ + PEGPASS + + + D + + G A G EE E+ Sbjct: 455 SSCTGTPLSSTISSPEGPASSSLAQSVMS--MASSQISTDTVSSMSGSYIAPGTEEEGEA 512 Query: 49 RS 44 S Sbjct: 513 LS 514 >AK055949-1|BAB71053.1| 352|Homo sapiens protein ( Homo sapiens cDNA FLJ31387 fis, clone NT2NE1000018, weakly similar to SUPPRESSOR PROTEIN SRP40. ). Length = 352 Score = 29.9 bits (64), Expect = 4.2 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = -3 Query: 229 SSSSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLES 50 SS +G +S+ + PEGPASS + + + D + + G A G EE E+ Sbjct: 166 SSCTGTPLSSTISSPEGPASSSLAQSVMS--MASSQISTDTVSSMSGSYIAPGTEEEGEA 223 Query: 49 RS 44 S Sbjct: 224 LS 225 >AB067504-1|BAB67810.2| 702|Homo sapiens KIAA1917 protein protein. Length = 702 Score = 29.9 bits (64), Expect = 4.2 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = -3 Query: 229 SSSSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLES 50 SS +G +S+ + PEGPASS + + + D + + G A G EE E+ Sbjct: 516 SSCTGTPLSSTISSPEGPASSSLAQSVMS--MASSQISTDTVSSMSGSYIAPGTEEEGEA 573 Query: 49 RS 44 S Sbjct: 574 LS 575 >Y14318-1|CAA74699.1| 606|Homo sapiens peroxisomal ABC-transporter protein. Length = 606 Score = 29.5 bits (63), Expect = 5.5 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 252 FWERQHCSHLRLVSSQIRLLQNQRDLLPVDLRIFVSLVHF 133 F+ H H+R RLLQ QR+L+ +L +++ + F Sbjct: 238 FYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTF 277 >CR457104-1|CAG33385.1| 606|Homo sapiens ABCD4 protein. Length = 606 Score = 29.5 bits (63), Expect = 5.5 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 252 FWERQHCSHLRLVSSQIRLLQNQRDLLPVDLRIFVSLVHF 133 F+ H H+R RLLQ QR+L+ +L +++ + F Sbjct: 238 FYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTF 277 >BT007412-1|AAP36080.1| 606|Homo sapiens ATP-binding cassette, sub-family D (ALD), member 4 protein. Length = 606 Score = 29.5 bits (63), Expect = 5.5 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 252 FWERQHCSHLRLVSSQIRLLQNQRDLLPVDLRIFVSLVHF 133 F+ H H+R RLLQ QR+L+ +L +++ + F Sbjct: 238 FYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTF 277 >BC012815-1|AAH12815.1| 606|Homo sapiens ATP-binding cassette, sub-family D (ALD), member 4 protein. Length = 606 Score = 29.5 bits (63), Expect = 5.5 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 252 FWERQHCSHLRLVSSQIRLLQNQRDLLPVDLRIFVSLVHF 133 F+ H H+R RLLQ QR+L+ +L +++ + F Sbjct: 238 FYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTF 277 >AF009746-1|AAB83967.1| 606|Homo sapiens peroxisomal membrane protein 69 protein. Length = 606 Score = 29.5 bits (63), Expect = 5.5 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 252 FWERQHCSHLRLVSSQIRLLQNQRDLLPVDLRIFVSLVHF 133 F+ H H+R RLLQ QR+L+ +L +++ + F Sbjct: 238 FYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTF 277 >AP008747-4|BAE13699.1| 227|Homo sapiens cytochrome oxydase subunit II protein. Length = 227 Score = 29.1 bits (62), Expect = 7.3 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + + T H H +++ I F+++ A+F+ + L N Sbjct: 13 TSPIMKELITFHDHALMIIFLICFLVLYALFLTLTTKLTN 52 >U12693-1|AAA20846.1| 227|Homo sapiens cytochrome oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >EF657504-4|ABR96516.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++ I F+I+ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLILYALFLTLTTKLTN 52 >EF093554-4|ABL61830.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >DQ282474-4|ABB79225.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++ I F+I+ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLILYALFLTLTTKLTN 52 >DQ282473-4|ABB79212.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++ I F+I+ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLILYALFLTLTTKLTN 52 >DQ282472-4|ABB79199.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++ I F+I+ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLILYALFLTLTTKLTN 52 >DQ246818-4|ABB45497.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >DQ112914-4|AAZ02753.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >DQ112902-4|AAZ02597.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >DQ112879-4|AAZ02298.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >DQ112794-4|AAZ01193.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >DQ112789-4|AAZ01128.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++ I F+I+ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLILYALFLTLTTKLTN 52 >AY714004-4|AAU02491.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >AP008678-4|BAE12802.1| 227|Homo sapiens cytochrome oxydase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >AP008623-4|BAE12087.1| 227|Homo sapiens cytochrome oxydase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >AP008495-4|BAE10421.1| 227|Homo sapiens cytochrome oxydase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >AP008370-4|BAE08796.1| 227|Homo sapiens cytochrome oxydase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 >AF347013-4|AAK17860.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++ I F+I+ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLILYALFLTLTTKLTN 52 >AF347012-4|AAK17847.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +++ I F+I+ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLILYALFLTLTTKLTN 52 >AF347008-4|AAK17795.1| 227|Homo sapiens cytochrome c oxidase subunit II protein. Length = 227 Score = 28.7 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 386 TSPSCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLIN 267 TSP + T H H +V+ I F+++ A+F+ + L N Sbjct: 13 TSPIMEELITFHDHALMVIFLICFLVLYALFLTLTTKLTN 52 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 54,670,231 Number of Sequences: 237096 Number of extensions: 980557 Number of successful extensions: 6396 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 6305 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6396 length of database: 76,859,062 effective HSP length: 84 effective length of database: 56,942,998 effective search space used: 3701294870 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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