Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1057
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    30   0.68 
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    30   0.89 
Z69658-2|CAB60997.1|  389|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U59213-1|AAB09672.1|  363|Caenorhabditis elegans transmembrane p...    27   6.3  
U58743-4|AAB00617.1|  177|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = -2

Query: 377 SCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFV 198
           +C ++ T++  + + L  I  VI R +  VI    ++ +  H  S SI L  +W+  K  
Sbjct: 276 TCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFALKLA 335

Query: 197 FCRTRGTCFQWIYAFSFRWST 135
               +       +  +  W+T
Sbjct: 336 HPSAQPVAAWVFFTSNLAWTT 356


>Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = -2

Query: 377 SCRAIKTSHFHIRIVLSXISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFV 198
           +C ++ T++  + + L  I  VI R +  VI    ++ +  H  S SI L  +W+  K  
Sbjct: 276 TCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFALKLA 335

Query: 197 FCRTRGTCFQWIYAFSFRWST 135
               +       +  +  W+T
Sbjct: 336 HPSAQPVAAWVFFTSNLAWTT 356


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 362 KTSHFHIRIVLSXISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTR 183
           KT  +HI++ +  +   +++A+F+V+P T I  L  +F S  I      Y +  +    +
Sbjct: 627 KTVKYHIQVTVLFLCSCVIQALFVVLPVTHI-VLCVYFDSFKIYTKDYIY-YSLLTQAHQ 684

Query: 182 GTCFQWIYAFS 150
           GT F   Y  S
Sbjct: 685 GTAFTLFYVLS 695


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 281 HTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 156
           HT+  K+WFH+G D +VL   W    K       G  F  WI+A
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157


>Z69658-2|CAB60997.1|  389|Caenorhabditis elegans Hypothetical
           protein C36H8.2 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 233 VLIFVWYRHKFVFCRTRGTCFQWIY 159
           + IF+W+   FV   +   CF+WIY
Sbjct: 276 LFIFLWFWLVFVAVVSTVNCFKWIY 300


>U59213-1|AAB09672.1|  363|Caenorhabditis elegans transmembrane
           protein protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 233 VLIFVWYRHKFVFCRTRGTCFQWIY 159
           + IF+W+   FV   +   CF+WIY
Sbjct: 250 LFIFLWFWLVFVAVVSTVNCFKWIY 274


>U58743-4|AAB00617.1|  177|Caenorhabditis elegans Hypothetical
           protein F39F10.5 protein.
          Length = 177

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 402 TSRNINISQLQSHQNQSFPY 343
           T  NI +S+LQSH+N+ + Y
Sbjct: 98  TVHNIALSRLQSHRNKQYEY 117


>AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical
           protein Y57A10C.8 protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 302 AIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVF 195
           AIF  + +  INK+   F ++++ L F+W+   F+F
Sbjct: 137 AIFFPVHYRNINKI--KFANNAMALGFIWFLFDFLF 170


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 249 WERQHCSHLRLVSSQIRLLQNQRDLLP 169
           W   HC +L    S IRLL++ R+  P
Sbjct: 439 WYDSHCQYLNSCQSVIRLLRDLRNKYP 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,617
Number of Sequences: 27780
Number of extensions: 155669
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)