Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1057
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    33   0.12 
At5g58950.1 68418.m07384 protein kinase family protein concontai...    29   1.5  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   3.4  
At4g22060.1 68417.m03190 F-box family protein contains F-box dom...    27   4.4  
At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putat...    27   4.4  
At3g18470.1 68416.m02347 expressed protein similar to PGPS/D12 [...    27   4.4  
At4g29220.1 68417.m04180 phosphofructokinase family protein simi...    27   5.9  

>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 147 KRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 284
           K+K VD L++G S   K++   +P +     V  KME E  N+++W
Sbjct: 84  KQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRNDAIW 129


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 201 EFVTIPDEDENNAVAPKMEPEFVNE 275
           + +T+PD+D+N  +  ++E +F  E
Sbjct: 234 KLITVPDDDDNGCLGARLEKQFTKE 258


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 162 DPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 284
           +PLE    G   D F T+P+        P +E +    ++W
Sbjct: 550 EPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLW 590


>At4g22060.1 68417.m03190 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 399

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 233 VLIFVWYRHKFV-FCRTRGTCFQWIYA 156
           +LI V+ R  FV F RT+  C  W+YA
Sbjct: 20  LLIMVFERLGFVDFQRTKSVCLAWLYA 46


>At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profiles PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase, PF01593: amine oxidase, flavin-containing
          Length = 867

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 137 WTSETKMRRSTGSRSLWFC 193
           WT+  ++ +  G R++WFC
Sbjct: 377 WTASQELHKIQGKRNIWFC 395


>At3g18470.1 68416.m02347 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 133

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 253 ILGATALFSSSSGIVTNSSFAEPEGPASSGSTHF 152
           ++G   LFS +      S F  PE P S   THF
Sbjct: 57  VVGLPCLFSCTYRTKIRSKFGLPESPTSDCVTHF 90


>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 473

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 178 PASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLES 50
           P S   THFR AGP   +   F++ D L  ++T  G+  GL +
Sbjct: 69  PDSPRGTHFRRAGP--RQRVYFESDDVLACIVTCGGLCPGLNT 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,135,681
Number of Sequences: 28952
Number of extensions: 148698
Number of successful extensions: 440
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)