Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1055
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    26   2.3  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   7.1  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   7.1  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 311 FXSHCSGRLWTXKKGYLGXVMLSKLLSRALGVQIL 207
           F   C G LW+  K   G     KLL R+LG QI+
Sbjct: 21  FLFDCDGVLWSGSKPIPGVTDTMKLL-RSLGKQII 54


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 142 GTSXFRSXXFNYLRRKRXP-ESXKIWTPSARDNNLDSITXPRYPFFXVHNLPE 297
           G S  +   ++ L   + P +S +I   S  DN + SI   ++P F +   PE
Sbjct: 127 GISAVKGMRYHSLYANKIPIDSLQILAQSDEDNIVMSIKATKFPHFGILYHPE 179


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 22  TKPLKM-FKITAILSLMLIGTTLWAXSLSCDSCGN 123
           +KP ++ FK+  ++   L     W    +CDSCG+
Sbjct: 260 SKPCQVSFKVERLVHKELNEYLSWMQPFTCDSCGS 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,533
Number of Sequences: 5004
Number of extensions: 19239
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)