Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1055
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102...    28   3.0  
05_07_0304 + 29096274-29096762                                         28   4.0  
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147...    27   5.3  
09_02_0548 - 10467342-10468810,10470309-10471632                       27   5.3  
08_02_0508 - 17986695-17986775,17987087-17987209                       27   5.3  
02_02_0221 + 8006708-8006950,8007049-8007252,8007559-8007750,800...    27   5.3  

>05_01_0154 +
           1020650-1022050,1022304-1022373,1022496-1022617,
           1022753-1023031,1023402-1023779,1024079-1024188,
           1024394-1024622,1024725-1025303
          Length = 1055

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 149 LVPHAEVHSLPHESHDKLXAQSVVPISIKERIAVILNIFKGFVC*XRCV 3
           LV  A  + L   SH +L   SVVP+  K R A++ N+ +  +   RC+
Sbjct: 529 LVKGAVENLLERSSHIQLQDGSVVPLDEKSRKAILENLHEMSIKALRCL 577


>05_07_0304 + 29096274-29096762
          Length = 162

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +2

Query: 92  RXVCRATRAVMSAPQHAAPAXSGRAXSTT*GGNGDPNPTRSGLRVPATITWTA 250
           R VCR+ R + S P   A   +G       G    P P R  + V  +I WTA
Sbjct: 21  RAVCRSWRRITSCPYFLAARDAGGILRRPPGAGAGPRPVR--MLVHCSI-WTA 70


>10_08_0959 -
           21813756-21814097,21814462-21814570,21814688-21814740,
           21814849-21815049,21815320-21815433,21815513-21815671,
           21816490-21816849,21816928-21817149,21817967-21818093,
           21818887-21819023,21819169-21819292,21819665-21820174,
           21820255-21820436,21820812-21820862,21821114-21821266,
           21821339-21821437,21821519-21821861,21821957-21822030,
           21822105-21823025,21823133-21823257,21823419-21823461,
           21823574-21823762,21824814-21825074,21825228-21825387,
           21826200-21826363,21826523-21827009,21827090-21827431,
           21827519-21827836,21828001-21828041,21828136-21828388,
           21829158-21829261,21830198-21830386,21830543-21831196,
           21831320-21831610,21831739-21831882,21832107-21832205,
           21832549-21832657,21832739-21832923,21833008-21833121,
           21833270-21833401,21833483-21833815,21833945-21834436,
           21834773-21834847,21834917-21835066,21835143-21835241,
           21835463-21835547,21837188-21837375,21837513-21837647,
           21837729-21837849,21838127-21838194,21838275-21838370,
           21838450-21838554,21838665-21838980,21839053-21839142,
           21840011-21840181,21840850-21841010,21841088-21841270,
           21841839-21841940,21842515-21842632,21842704-21842798,
           21842972-21843022,21843107-21843241,21843333-21843436,
           21844249-21844414,21844649-21844773,21845220-21845316
          Length = 4181

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 136 LRCTHYRTSRTTNSPPRAWCRLALK 62
           L+  HYR S    S PR+W + A K
Sbjct: 412 LKYAHYRPSLPVKSDPRSWWKYAYK 436


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 101 CRATRAVMSAPQHAAPAXSGRAXSTT*GGNGDPNPT 208
           C +T     AP  A P   G   STT  GNG P PT
Sbjct: 8   CCSTNNSSKAPATARPTTKG---STTASGNGRPPPT 40


>08_02_0508 - 17986695-17986775,17987087-17987209
          Length = 67

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 270 RVSGXSDAVQVIVAGTRSPDLVGFGSPFPPQVV 172
           RV   S +  V  A +RSP+L  F SP PP V+
Sbjct: 22  RVRCISPSSTVQHAASRSPELPPFPSPPPPNVI 54


>02_02_0221 +
           8006708-8006950,8007049-8007252,8007559-8007750,
           8007860-8008098,8009756-8009851,8009966-8010058,
           8011481-8011561,8012432-8012518,8012904-8013033,
           8013223-8013528,8013749-8013772,8014162-8014240,
           8014572-8014708,8015427-8015477
          Length = 653

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 4   TQRXQQTKPLKMFKITAILSLMLIGTTLWAXSLSCDSCG--NECTSACGTS 150
           +QR +Q    + FK+ ++ ++ML  T      L C S    N   S CG S
Sbjct: 291 SQRQEQDDNNRSFKVPSLRNIMLKSTNSMEGKLRCSSHSEPNVANSFCGRS 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,263,988
Number of Sequences: 37544
Number of extensions: 154407
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)