Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1055
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical...    28   3.6  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    27   4.8  

>AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical
           protein Y17G7B.11 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 259 PRYPFFXVHNLPEQWLXNLPSDYKP 333
           PRYP +  +NLP+Q    LP +Y P
Sbjct: 389 PRYPVY--NNLPQQQNSQLPPEYAP 411


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 91  AXSLSCDSCGNECTSACGTS 150
           A  +   SC N+C+S+CG S
Sbjct: 117 ATPICAQSCNNQCSSSCGNS 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,365,368
Number of Sequences: 27780
Number of extensions: 116170
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)