Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1055
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -2

Query: 140 HAEVHSLPHESH 105
           H+ +H+ PH  H
Sbjct: 423 HSHIHATPHHHH 434


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 46  ITAILSLMLIGTTLWAXSLSCDSCGNECTSACGTSXFRS 162
           +  +L +++I T L     S D C  +  S C T  +R+
Sbjct: 541 VVVLLVIIIIMTVLILRRAS-DECNKKQPSDCDTLEYRN 578


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 PSARDNNLDSITXPRY 267
           P+A +  +  +T PRY
Sbjct: 384 PNAEERRVQGVTKPRY 399


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 PSARDNNLDSITXPRY 267
           P+A +  +  +T PRY
Sbjct: 299 PNAEERRVQGVTKPRY 314


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 PSARDNNLDSITXPRY 267
           P+A +  +  +T PRY
Sbjct: 618 PNAEERRVQGVTKPRY 633


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,065
Number of Sequences: 438
Number of extensions: 1291
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)