Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1054
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676           29   4.7  
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    29   4.7  
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208...    29   4.7  

>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
          Length = 964

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 277 MIITASFTALTF*SVSDFEGHTPVILRSDRDISN*IN 387
           +I+  +FT L    V DF G+T ++  + +++SN IN
Sbjct: 678 LILPGTFTKLYHMQVLDFIGNTDLVFSAGKEMSNLIN 714


>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
            5890540-5890710,5890840-5891007,5891139-5891234,
            5891777-5891839,5891949-5892114,5892207-5892274,
            5892646-5892789,5893111-5893176,5893329-5893520,
            5894567-5894657,5895241-5895329,5895521-5895583,
            5895698-5895823,5895902-5895991,5896059-5896181,
            5896503-5896619,5896704-5896904,5897643-5897723,
            5897897-5897977,5898083-5898184,5898264-5898488,
            5898571-5898726,5898798-5899010,5899306-5899455,
            5900082-5900204,5900299-5900364,5900555-5900620,
            5900686-5900817,5900891-5900965,5901355-5901438,
            5901516-5901668,5901741-5901806,5902044-5902205,
            5902272-5902388,5902495-5902566,5902702-5902761,
            5902869-5902985,5904131-5904430,5904518-5904622,
            5905710-5905775,5905853-5906297,5906399-5906567,
            5906684-5906736,5906819-5906925
          Length = 1981

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 690  FFFSIFNLERMRNXHRRHQLEKEIIEGTARSQRFEN 583
            F+    ++E      RRH  E E+I   A S  FEN
Sbjct: 945  FYLQYSSVEAYNEMLRRHMNESEVINMVAHSSEFEN 980


>03_01_0269 +
           2080338-2080508,2081086-2081335,2081432-2082648,
           2082933-2083083,2083247-2083563
          Length = 701

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 592 IRKHSSVNNVIYQHFNNFNT 533
           I KHSS N  I QH NN +T
Sbjct: 22  ISKHSSTNGEIKQHINNIDT 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,949,484
Number of Sequences: 37544
Number of extensions: 234397
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)