Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1054
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U28928-8|AAA68340.1|  661|Caenorhabditis elegans Peroxisomal mem...    29   4.2  
Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical
           protein F11A5.9 protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 1   LSFTSVYMFNCVLIFGLFDLLLRFNIRFKTH 93
           L + +VY  + V+ FGLF +L  F  RF+TH
Sbjct: 226 LGWPAVYYIHAVVTFGLF-VLFYFFYRFRTH 255


>U28928-8|AAA68340.1|  661|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 2 protein.
          Length = 661

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   LSFTSVYMFNCVLIFGLFDLLLRFNIRFKTH 93
           L+  ++ + N +L FG+ +L LRF  R  TH
Sbjct: 134 LNLPAISVTNAILKFGIAELKLRFRERLSTH 164


>Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical
           protein ZC15.8 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 529 VYAPY*HFRYQNQPYNTQQ 473
           V+A Y   +YQ QPYN QQ
Sbjct: 14  VFAQYQQQQYQQQPYNNQQ 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,404,252
Number of Sequences: 27780
Number of extensions: 251875
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)