Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1053
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 43 3e-05
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 43 3e-05
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 38 6e-04
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 1.4
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 1.4
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 1.4
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 1.4
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 7.6
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 42.7 bits (96), Expect = 3e-05
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 66 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVLAILARSVRQSL 215
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDV I A ++L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Frame = +1
Query: 184 PYWPGLFAKALEGINVRDLITNIGS--------GVG------XXXXXXXXXXXXXXXXXX 321
P W +FAKALEG ++++L+ NIGS G G
Sbjct: 40 PIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEE 99
Query: 322 SDDDMGFGLFD 354
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 42.7 bits (96), Expect = 3e-05
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 66 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVLAILARSVRQSL 215
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDV I A ++L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50
Score = 41.9 bits (94), Expect = 5e-05
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Frame = +1
Query: 184 PYWPGLFAKALEGINVRDLITNIGSGVG-------------XXXXXXXXXXXXXXXXXXS 324
P W +FAKALEG ++++L+ NIGSG G S
Sbjct: 40 PIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEES 99
Query: 325 DDDMGFGLFD 354
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 38.3 bits (85), Expect = 6e-04
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 66 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVLAILARSVRQSL 215
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+V I A ++L
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKAL 50
Score = 38.3 bits (85), Expect = 6e-04
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Frame = +1
Query: 184 PYWPGLFAKALEGINVRDLITNIGS----------GVG---XXXXXXXXXXXXXXXXXXS 324
P W +FAKALEG ++++L+ NIGS G G S
Sbjct: 40 PIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEES 99
Query: 325 DDDMGFGLFD 354
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 322 SDDDMGFGLFD 354
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 322 SDDDMGFGLFD 354
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 322 SDDDMGFGLFD 354
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 322 SDDDMGFGLFD 354
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 238 GHGH*CLPRLWRTDL 194
G+G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,466
Number of Sequences: 5004
Number of extensions: 26196
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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