Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1053
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    44   5e-05
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212...    29   2.5  
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422     28   4.3  
09_04_0725 + 19749227-19749361,19749705-19749772,19749869-197499...    27   7.5  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   7.5  
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508...    27   10.0 
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    27   10.0 
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533...    27   10.0 

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +3

Query: 66  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVLA 185
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + V A
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEA 40



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
 Frame = +1

Query: 187 YWPGLFAKALEGINVRDLITNIGSGVGXXXXXXXXXXXXXXXXXX--------------S 324
           YWPGLFAK LE  +V DLI ++GSG G                                S
Sbjct: 41  YWPGLFAKLLEHRSVDDLILSVGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEES 100

Query: 325 DDDMGFGLFD 354
           DDDMGF LFD
Sbjct: 101 DDDMGFSLFD 110


>09_04_0318 -
           16620177-16620582,16620686-16620765,16620873-16621213,
           16621298-16621559
          Length = 362

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 193 ANMASTSTAAAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFSFER 47
           A+ A+TS+ AA         + ATSSS    A   H  S+F  +FS  R
Sbjct: 298 ASSAATSSTAAPPAAPSSGGIAATSSSAAAAAAPDHRPSSFAALFSSPR 346


>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
          Length = 259

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 99  ALILVDDDVAVTGEKISTILKAAAVDVLAILARSVRQSLGRHQCP*PD 242
           AL  + DDV  T E IS  L+A+++D L +   S+R  L   Q   P+
Sbjct: 115 ALAPLSDDVKKTLEDISYRLEASSLDSLVVDCGSIRARLHEVQALIPE 162


>09_04_0725 +
           19749227-19749361,19749705-19749772,19749869-19749938,
           19750244-19751482,19755359-19755423,19755502-19755655,
           19755725-19755733
          Length = 579

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 263 TPEPML-VIRSRTLMPSKALANRPGQYG*YIYSRRFQ-DGGNFLTSYGNIII 114
           TP  +L  ++    +PS    + PG +  +I S   + D  N ++S GNI +
Sbjct: 209 TPSMLLDSLKKEVFIPSSTCRSEPGNFSHFISSLTTKDDSNNSISSSGNITV 260


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 138 HQLRQHHHPPG*EQSKH 88
           HQ R+HHHPP  +   H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578


>09_02_0157 +
           5083771-5083996,5084007-5084326,5085958-5086392,
           5087277-5087921
          Length = 541

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 213 GFGEQTWPIWLVHLQPPLSR 154
           GFG Q  P++L  + PPL R
Sbjct: 178 GFGNQAVPLYLSEMAPPLHR 197


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 216 QGFGEQTWPIWLVHLQPPLSRWW 148
           Q   +  W +W+ H  P L+ WW
Sbjct: 217 QQLPQDKWAVWVSHHLPWLTYWW 239


>04_03_0857 +
           20352331-20352582,20352740-20352951,20353047-20353308,
           20353418-20353726
          Length = 344

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 216 QGFGEQTWPIWLVHLQPPLSRWW 148
           Q   +  W +W+ H  P L+ WW
Sbjct: 184 QQLPQDKWAVWVSHHLPWLTYWW 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,546,064
Number of Sequences: 37544
Number of extensions: 207967
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)